Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_024140.1 Length=72028 Score E Sequences producing significant alignments: (Bits) Value seq308694 105 3e-18 >seq308694 Length=301 Score = 105 bits (116), Expect = 3e-18 Identities = 199/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Plus Query 67857 TAAGCCCAGACACTGATCACACTGAAGTCACTCGCCTTCTTCGCAGAGGTAGCGAAGTCA 67916 || |||||||| ||| ||| ||||||| || ||| ||| ||||| |||||| Sbjct 9 TAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAGTCA 68 Query 67917 GTGGTGATGTAGAAGTTGTACCGCTTCTTGTTGTCCAGTACGTTGCGCCGCATGTACCAA 67976 ||||||||||||||||| | || | |||||| | ||| | | | | ||||| Sbjct 69 GTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAATAGAATCCAACTTAAACCAA 128 Query 67977 GCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTCT 68036 | | |||||||| || || | || ||||| || |||||||| | ||||| ||||| Sbjct 129 CCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGCTCC 188 Query 68037 TGGTTGAATGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAAG 68096 |||||||| || || | || |||| ||||| | |||| | | ||| | Sbjct 189 TGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACGTAC 248 Query 68097 TCGTAGGTGAATCGGTCAGCCCATGCACCCTTGAACTCTTCCCGTGAGCACGG 68149 || || ||||| || |||| ||| | ||| |||| |||||| ||||| || Sbjct 249 TCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCAAGG 301 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 226892775209285