Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_024367.1 Length=75028 Score E Sequences producing significant alignments: (Bits) Value seq308694 107 9e-19 >seq308694 Length=301 Score = 107 bits (118), Expect = 9e-19 Identities = 146/200 (73%), Gaps = 8/200 (4%) Strand=Plus/Minus Query 5981 CCTTCCGTCAGGAACTTATGCTTCGAATCACGTCTGATGAATCTCGTCTGATCCAAGAAG 6040 ||||| ||||| || ||||| ||||||| |||||| ||| ||| |||| ||||| | Sbjct 198 CCTTCAACCAGGAGCTAATGCTACGAATCATGTCTGAAGAAGATCGCATGATTCAAGATG 139 Query 6041 ATGAGATTGGTTGG---AAGTCTCGTACTGAAATTCTGAACAACC-GGAAGAACTACAAC 6096 ||| ||||||||| |||| | || |||||||| ||| |||| | | ||| Sbjct 138 GTGATATTGGTTGGTTTAAGTTGGATTCT---ATTCTGAAGAACAAGGAACGATTT-AAC 83 Query 6097 TTCTATATCACCACTGACTTTGCCACTTCGTCGAAGCAAACTGCTGATTACACTGTGATT 6156 ||||| ||||||||||||||||| ||||| ||||| | ||||| | | |||| || Sbjct 82 TTCTACATCACCACTGACTTTGCTACTTCTATCAAGCAGAAAGCTGACTTCTCTGTCATC 23 Query 6157 TCTGTGTGGGCTTACGACAA 6176 || || ||||| || |||| Sbjct 22 TCAGTCTGGGCCTATAACAA 3 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236348085404285