Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_025431.1 Length=45718 Score E Sequences producing significant alignments: (Bits) Value seq78044 230 7e-56 >seq78044 Length=1110 Score = 230 bits (254), Expect = 7e-56 Identities = 310/432 (72%), Gaps = 0/432 (0%) Strand=Plus/Plus Query 7908 CGGGCACCGCTTCGCGACGGTTCTGGCTGATCCTCCTTGGCGCTTTCAGAACAGCACAGG 7967 ||||| |||||| ||||| | || |||||||| || |||| |||||||| |||| || Sbjct 364 CGGGCGTCGCTTCTCGACGATCCTCGCTGATCCGCCGTGGCAGTTTCAGAATCGCACGGG 423 Query 7968 CAAAGTTGCACCAGAGCACCGTCGCCTTAGCCGCTATGGCACGTTGTCGCTTCCAGAGAT 8027 || || || || |||||| || || |||||||| || || || || || Sbjct 424 AAAGGTAGCGCCGGAGCACAAACGGCTGTCGCGCTATGGAACCATGCAACTCGAGGACAT 483 Query 8028 CGAGGCGTTGCCAGTTGCGGAGATCGTAAAAGAGCCATCTCATCTTTATCTATGGGTACC 8087 | ||| ||||| ||| | | |||| | | || | | ||| | ||||||||||| || Sbjct 484 CATGGCTTTGCCGGTTTCTCAAATCGCAGAGGATACGGCGCATTTGTATCTATGGGTTCC 543 Query 8088 GAACGCCCTCCTGGCGGAAGGACTGTCCGTGATGGCGGCGTGGGGCTTCACATACAAATC 8147 ||| ||||| ||| | ||||| || ||| |||| || ||||| ||| |||||| Sbjct 544 GAATGCCCTGCTGCCTGAAGGCTTGCGCGTAATGGAAGCCTGGGGATTCCAATACAAGAG 603 Query 8148 GAACATCGTGTGGCACAAAATCCGCAAAGACGGCGGGTCAGACGGTCGCGGCGTCGGCTT 8207 || | ||||||||||| || ||||| |||||||| | || ||||||||||| || || Sbjct 604 CAATCTGGTGTGGCACAAGATTCGCAAGGACGGCGGCCCTGATGGTCGCGGCGTTGGTTT 663 Query 8208 TTATTTCCGGAATGTGACCGAGATTATCCTGTTTGGGACAAAGGGAAAAAACGCCAGAAC 8267 || ||||| ||||| ||||| | || ||||||| |||||| ||||||||||| Sbjct 664 CTACTTCCGTAATGTCACCGAACTGGTCTTGTTTGGTGTCCGGGGAAAGAACGCCAGAAC 723 Query 8268 ACTCGCACCCGGTCGCACCCAAGTGAACTACATCTCTTCGCAGAAGCGGGAGCACTCACG 8327 || || || || |||| |||||| |||| | | | |||||||||||||||| || || Sbjct 724 GCTTGCGCCTGGGCGCAGCCAAGTCAACTTCTTGGCAACGCAGAAGCGGGAGCATTCCCG 783 Query 8328 CAAACCAGATGA 8339 || || || || Sbjct 784 TAAGCCTGACGA 795 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144029347426400