Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_025960.1 Length=148981 Score E Sequences producing significant alignments: (Bits) Value seq277093 102 8e-17 seq307481 96.9 3e-15 seq16451 96.9 3e-15 seq1236130 93.3 4e-14 seq458253 93.3 4e-14 seq753218 86.0 6e-12 seq114939 86.0 6e-12 seq304998 82.4 7e-11 >seq277093 Length=401374 Score = 102 bits (112), Expect = 8e-17 Identities = 152/216 (70%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | | ||||| || || || |||||||| | ||| || | Sbjct 296725 CGCAGGACGAGATGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCGGCCA 296784 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| | | |||| |||||| || || ||||| |||||||| || Sbjct 296785 TCTTCGAGCTGTTTCCCGGCAAATATTAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 296844 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | || | || || | ||| ||||| | || | | Sbjct 296845 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 296904 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| |||||||| | || ||||||||| Sbjct 296905 GTCTTACCAGTGAGAGTTTTGACAAAGATCTGCATG 296940 >seq307481 Length=1856025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 155/223 (70%), Gaps = 0/223 (0%) Strand=Plus/Plus Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961 ||||| ||||| || | ||| | | | ||||| || ||||||||||| ||| | || Sbjct 1819341 ACGCAGACGCAAGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGAGT 1819400 Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021 ||| ||| || ||||| || || | | | ||||| | ||||||||| ||||| || || Sbjct 1819401 TCGCCCATCCTCCAGCTGCTTGCCAGCAAATATTAGCCTCTGTTGATCAGGAGGAATTCC 1819460 Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081 ||| || || ||| || ||||| | || | ||| || | ||| ||||| | Sbjct 1819461 TTCCTTGTCCTGAATCTTAGCTTTCACATTATCTATAGTGTCAGAACTCTCAACTTCTAA 1819520 Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || | ||||||||| |||| ||| || | || || |||||| Sbjct 1819521 TGTTATCGTTTTACCCGTCAAAGTCTTCACAAATATTTGCATG 1819563 >seq16451 Length=660335 Score = 96.9 bits (106), Expect = 3e-15 Identities = 148/211 (70%), Gaps = 0/211 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||||| | | || || ||||| || ||||||||| | ||| || |||||| Sbjct 128007 AACAAGATGTAGGGTAGATTCCTTTTGTATATTGTAGTCGGCAAGGGTTCGACCATCTTC 128066 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 |||||| || |||| | |||| | |||||| || || || || |||||||||||||| Sbjct 128067 GAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCTTTATCCTG 128126 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || || |||| | || | || || | ||| ||||| | || | ||| || Sbjct 128127 GATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTTATCGTCTT 128186 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 ||||| || ||||| | ||| ||||||||| Sbjct 128187 GCCAGTGAGGGTTTTGACGAAGATCTGCATG 128217 >seq1236130 Length=574753 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | ||||||| || || || |||||||| | || || | Sbjct 402399 CGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCAAGAGTCCGGCCA 402458 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| | | |||| |||||| || || || || |||||||| || Sbjct 402459 TCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTG 402518 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | || | || || | ||| ||||| | || | | Sbjct 402519 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 402578 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| || ||||| | || ||||||||| Sbjct 402579 GTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATG 402614 >seq458253 Length=694718 Score = 93.3 bits (102), Expect = 4e-14 Identities = 150/216 (69%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968 |||| || | ||| | | ||||||| || || || |||||||| | || || | Sbjct 118996 CGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCAAGAGTCCGGCCA 119055 Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 |||||||||||||| |||| | | |||| |||||| || || || || |||||||| || Sbjct 119056 TCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTG 119115 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || ||||| ||||| | || | || || | ||| ||||| | || | | Sbjct 119116 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 119175 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124 || |||||||| || ||||| | || ||||||||| Sbjct 119176 GTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATG 119211 >seq753218 Length=1074133 Score = 86.0 bits (94), Expect = 6e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973 ||| | ||| | | | || || ||||||||||| || ||| || ||| || ||| || Sbjct 399362 AACAAGATGCAGGGTCGATTCCTTTTGAATGTTATAATCGGCCAAGGTCCGGCCATCCTC 399421 Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033 | ||||||||| | | | ||||| | ||| || ||||| || || || |||||||| Sbjct 399422 CAACTGTTTACCAGCAAAAATTAGCCTCTGCTGGTCTGGGGGAATACCCTCTTTATCCTG 399481 Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093 || ||| |||| | || | || || | ||||||||| | || | ||| || Sbjct 399482 GATCTTTGCCTTCACATTATCGATGGTGTCCGAGCTCTCCACTTCCAGAGTGATCGTCTT 399541 Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 ||||| || ||||| | ||||||||||| Sbjct 399542 GCCAGTAAGGGTTTTGACAAAAATCTGCAT 399571 >seq114939 Length=6097 Score = 86.0 bits (94), Expect = 6e-12 Identities = 112/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Minus Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028 || ||||||||||| |||| | |||| | | ||| ||||| || || || || || || Sbjct 1455 TCCTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGTGGAATACCCTCCTTG 1396 Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088 || |||||| |||| || || | |||||||| ||| ||||||| ||| | Sbjct 1395 TCTTGAATTTTGGCCTTCACATGGTCAATAGTATCGGAGTTCTCAACTTCGAGCGTGATG 1336 Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123 || || |||||||| ||||| | ||| |||||||| Sbjct 1335 GTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 1301 >seq304998 Length=937332 Score = 82.4 bits (90), Expect = 7e-11 Identities = 135/195 (69%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989 || || || ||||| ||||||||| | ||| || ||||||||| || || || | | Sbjct 714853 GATTCCTTCTGAATATTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCA 714794 Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049 |||| | |||||| || || || || |||||||| ||||| ||||| |||| Sbjct 714793 AAGATCAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 714734 Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109 | || | ||||| | ||| ||||| | || | || || || || |||||||| Sbjct 714733 TTGTCAATGGTATCTGAACTCTCAACTTCCAAAGTAATTGTCTTTCCGGTAAGAGTTTTG 714674 Query 132110 ATGAAAATCTGCATG 132124 | |||||||||||| Sbjct 714673 ACAAAAATCTGCATG 714659 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 469243595129400