Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22]
1,236,665 sequences; 14,673,225,455 total letters
Query= NC_025960.1
Length=148981
Score E
Sequences producing significant alignments: (Bits) Value
seq277093 102 8e-17
seq307481 96.9 3e-15
seq16451 96.9 3e-15
seq1236130 93.3 4e-14
seq458253 93.3 4e-14
seq753218 86.0 6e-12
seq114939 86.0 6e-12
seq304998 82.4 7e-11
>seq277093
Length=401374
Score = 102 bits (112), Expect = 8e-17
Identities = 152/216 (70%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| || | ||| | | | ||||| || || || |||||||| | ||| || |
Sbjct 296725 CGCAGGACGAGATGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGCAAGGGTCCGGCCA 296784
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||||||||| |||| | | |||| |||||| || || ||||| |||||||| ||
Sbjct 296785 TCTTCGAGCTGTTTCCCGGCAAATATTAAACGCTGCTGGTCAGGAGGGATGCCTTCCTTG 296844
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||| ||||| | || | || || | ||| ||||| | || | |
Sbjct 296845 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 296904
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| |||||||| |||||||| | || |||||||||
Sbjct 296905 GTCTTACCAGTGAGAGTTTTGACAAAGATCTGCATG 296940
>seq307481
Length=1856025
Score = 96.9 bits (106), Expect = 3e-15
Identities = 155/223 (70%), Gaps = 0/223 (0%)
Strand=Plus/Plus
Query 131902 ACGCAAGCGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGT 131961
||||| ||||| || | ||| | | | ||||| || ||||||||||| ||| | ||
Sbjct 1819341 ACGCAGACGCAAGACGAGATGAAGGGTGGACTCCTTCTGAATGTTGTAATCGGCGAGAGT 1819400
Query 131962 ACGCGAATCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCC 132021
||| ||| || ||||| || || | | | ||||| | ||||||||| ||||| || ||
Sbjct 1819401 TCGCCCATCCTCCAGCTGCTTGCCAGCAAATATTAGCCTCTGTTGATCAGGAGGAATTCC 1819460
Query 132022 TTCTTTATCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGAC 132081
||| || || ||| || ||||| | || | ||| || | ||| ||||| |
Sbjct 1819461 TTCCTTGTCCTGAATCTTAGCTTTCACATTATCTATAGTGTCAGAACTCTCAACTTCTAA 1819520
Query 132082 CGTCAGCGTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| | ||||||||| |||| ||| || | || || ||||||
Sbjct 1819521 TGTTATCGTTTTACCCGTCAAAGTCTTCACAAATATTTGCATG 1819563
>seq16451
Length=660335
Score = 96.9 bits (106), Expect = 3e-15
Identities = 148/211 (70%), Gaps = 0/211 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||| | ||||| | | || || ||||| || ||||||||| | ||| || ||||||
Sbjct 128007 AACAAGATGTAGGGTAGATTCCTTTTGTATATTGTAGTCGGCAAGGGTTCGACCATCTTC 128066
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
|||||| || |||| | |||| | |||||| || || || || ||||||||||||||
Sbjct 128067 GAGCTGCTTTCCGGCAAAGATCAAACGCTGCTGGTCAGGCGGAATGCCTTCTTTATCCTG 128126
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| || |||| | || | || || | ||| ||||| | || | ||| ||
Sbjct 128127 GATCTTGGCCTTCACATTGTCAATGGTGTCTGAGCTCTCAACTTCCAATGTTATCGTCTT 128186
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
||||| || ||||| | ||| |||||||||
Sbjct 128187 GCCAGTGAGGGTTTTGACGAAGATCTGCATG 128217
>seq1236130
Length=574753
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| || | ||| | | ||||||| || || || |||||||| | || || |
Sbjct 402399 CGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCAAGAGTCCGGCCA 402458
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||||||||| |||| | | |||| |||||| || || || || |||||||| ||
Sbjct 402459 TCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTG 402518
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||| ||||| | || | || || | ||| ||||| | || | |
Sbjct 402519 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 402578
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| |||||||| || ||||| | || |||||||||
Sbjct 402579 GTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATG 402614
>seq458253
Length=694718
Score = 93.3 bits (102), Expect = 4e-14
Identities = 150/216 (69%), Gaps = 0/216 (0%)
Strand=Plus/Plus
Query 131909 CGCAAAACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAA 131968
|||| || | ||| | | ||||||| || || || |||||||| | || || |
Sbjct 118996 CGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCAAGAGTCCGGCCA 119055
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|||||||||||||| |||| | | |||| |||||| || || || || |||||||| ||
Sbjct 119056 TCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTG 119115
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| ||||| ||||| | || | || || | ||| ||||| | || | |
Sbjct 119116 TCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCTCTCAACTTCCAAAGTAATC 119175
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCATG 132124
|| |||||||| || ||||| | || |||||||||
Sbjct 119176 GTCTTACCAGTGAGGGTTTTGACAAAGATCTGCATG 119211
>seq753218
Length=1074133
Score = 86.0 bits (94), Expect = 6e-12
Identities = 145/210 (69%), Gaps = 0/210 (0%)
Strand=Plus/Plus
Query 131914 AACCAAATGTATGTTTGACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTC 131973
||| | ||| | | | || || ||||||||||| || ||| || ||| || ||| ||
Sbjct 399362 AACAAGATGCAGGGTCGATTCCTTTTGAATGTTATAATCGGCCAAGGTCCGGCCATCCTC 399421
Query 131974 GAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGT 132033
| ||||||||| | | | ||||| | ||| || ||||| || || || ||||||||
Sbjct 399422 CAACTGTTTACCAGCAAAAATTAGCCTCTGCTGGTCTGGGGGAATACCCTCTTTATCCTG 399481
Query 132034 AATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTT 132093
|| ||| |||| | || | || || | ||||||||| | || | ||| ||
Sbjct 399482 GATCTTTGCCTTCACATTATCGATGGTGTCCGAGCTCTCCACTTCCAGAGTGATCGTCTT 399541
Query 132094 ACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
||||| || ||||| | |||||||||||
Sbjct 399542 GCCAGTAAGGGTTTTGACAAAAATCTGCAT 399571
>seq114939
Length=6097
Score = 86.0 bits (94), Expect = 6e-12
Identities = 112/155 (72%), Gaps = 0/155 (0%)
Strand=Plus/Minus
Query 131969 TCTTCGAGCTGTTTACCGGAATAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTA 132028
|| ||||||||||| |||| | |||| | | ||| ||||| || || || || || ||
Sbjct 1455 TCCTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGATCGGGTGGAATACCCTCCTTG 1396
Query 132029 TCGGTAATTTTTTGTTTCAACTGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGC 132088
|| |||||| |||| || || | |||||||| ||| ||||||| ||| |
Sbjct 1395 TCTTGAATTTTGGCCTTCACATGGTCAATAGTATCGGAGTTCTCAACTTCGAGCGTGATG 1336
Query 132089 GTTTTACCAGTCAGAGTTTTTATGAAAATCTGCAT 132123
|| || |||||||| ||||| | ||| ||||||||
Sbjct 1335 GTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 1301
>seq304998
Length=937332
Score = 82.4 bits (90), Expect = 7e-11
Identities = 135/195 (69%), Gaps = 0/195 (0%)
Strand=Plus/Minus
Query 131930 GACTCTTTTTGAATGTTGTAGTCGCTCATGGTACGCGAATCTTCGAGCTGTTTACCGGAA 131989
|| || || ||||| ||||||||| | ||| || ||||||||| || || || | |
Sbjct 714853 GATTCCTTCTGAATATTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGTTGCTTTCCAGCA 714794
Query 131990 TAGATTAGACGCTGTTGATCTGGAGGTATGCCTTCTTTATCGGTAATTTTTTGTTTCAAC 132049
|||| | |||||| || || || || |||||||| ||||| ||||| ||||
Sbjct 714793 AAGATCAAACGCTGCTGGTCAGGGGGGATGCCTTCCTTATCCTGGATTTTGGCCTTCACA 714734
Query 132050 TGTTCCACAGTATCGGTCGGCTCCACTTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTT 132109
| || | ||||| | ||| ||||| | || | || || || || ||||||||
Sbjct 714733 TTGTCAATGGTATCTGAACTCTCAACTTCCAAAGTAATTGTCTTTCCGGTAAGAGTTTTG 714674
Query 132110 ATGAAAATCTGCATG 132124
| ||||||||||||
Sbjct 714673 ACAAAAATCTGCATG 714659
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 469243595129400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |