Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_026268.1 Length=139132 Score E Sequences producing significant alignments: (Bits) Value seq842679 93.3 4e-14 seq307481 91.5 1e-13 seq878211 89.7 5e-13 seq810261 89.7 5e-13 seq114939 89.7 5e-13 seq679059 87.8 2e-12 seq1197656 86.0 5e-12 seq265356 86.0 5e-12 seq1192815 84.2 2e-11 >seq842679 Length=263869 Score = 93.3 bits (102), Expect = 4e-14 Identities = 162/233 (70%), Gaps = 2/233 (1%) Strand=Plus/Minus Query 25172 AACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGA-AGC 25230 || ||||| | ||||| || || || |||||||| | ||||| | || || || ||| Sbjct 132589 AAGATGCAGATATTTGTGAAGACGTTGACCGGAAAGACCATCACTCTTGAGGTGGAGAGC 132530 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 | ||||| || || | || || || ||| || |||||||| || || || || Sbjct 132529 TCA-GATACCATTGACAACGTTAAGTCGAAGATTCAGGACAAAGAGGGAATTCCCCCTGA 132471 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 ||| || || ||||| | | |||||| || || ||||| | ||| | || ||||| Sbjct 132470 TCAACAGAGGCTCATATTTGCCGGCAAGCAGCTGGAAGACGGCCGAACTCTCGCTGATTA 132411 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 ||||||||| || |||||||| |||| | ||| | | | |||||||||| Sbjct 132410 CAATATTCAGAAGGAATCCACTCTTCACCTCGTGCTCCGTCTCAGAGGAGGAA 132358 >seq307481 Length=1856025 Score = 91.5 bits (100), Expect = 1e-13 Identities = 146/210 (70%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| |||||| | ||||| || | ||||| | |||||||| | | Sbjct 1819790 ATGCAAATCTTTGTGAAAACACTGACCGGCAAGACTATCACCCTTGAAGTCGAGAGCTCC 1819731 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || ||| ||| || || ||||| || || ||||||||| Sbjct 1819730 GATACTATTGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCCGATCAG 1819671 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || ||| | || | | || || ||||| ||||||| || | | | ||||| || Sbjct 1819670 CAGAGATTGATCTTTGCAGGGAAGCAACTTGAAGATGGGAGGACTCTGGCGGATTATAAC 1819611 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTG 25384 ||||| || || || ||| | ||| | ||| Sbjct 1819610 ATTCAGAAGGAGTCTACCCTGCATCTCGTG 1819581 >seq878211 Length=3116 Score = 89.7 bits (98), Expect = 5e-13 Identities = 153/220 (70%), Gaps = 4/220 (2%) Strand=Plus/Plus Query 25184 TTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAACGATACTATC 25243 ||||| || || || || || || | ||||| | ||||| ||| | || ||||| Sbjct 1087 TTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTATT 1146 Query 25244 GAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAGCAAAGACTC 25303 || | || || ||| ||| || || || ||||| || || || || |||||| | Sbjct 1147 GACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATTG 1206 Query 25304 ATTTACGGCGGCAAACAACTCGAAGATGATAGAAA--TGTCAGCGATTACAATATTCAAA 25361 || | | || || ||| | ||||| | ||||| |||| | | ||||| ||||||| Sbjct 1207 ATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTG--ACTACAACATTCAAA 1264 Query 25362 AAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 |||||||||| | || ||||| || ||||||||||| || Sbjct 1265 AAGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 1304 >seq810261 Length=116169 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || || | |||||| ||||||| || | | Sbjct 97313 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGCTCGAAGTTGAGAACTCC 97372 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || | || || |||||| || || |||||||| || ||||| ||| Sbjct 97373 GATACTATTGACAATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCACCCGACCAG 97432 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| ||||| ||||| || | | | | | |||||||||| Sbjct 97433 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAGGACGGACGCACTCTTGCCGATTACAAT 97492 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || || || |||||||| |||| | || || | | |||||||||| Sbjct 97493 ATCCAGAAGGAATCCACTCTTCACCTCGTCCTACGTCTCAGAGGAGGAA 97541 >seq114939 Length=6097 Score = 89.7 bits (98), Expect = 5e-13 Identities = 157/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | || || ||||| | || || || | |||||| ||||||| || | | Sbjct 1301 ATGCAGATCTTCGTCAAAACCCTGACTGGCAAGACCATCACGCTCGAAGTTGAGAACTCC 1360 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 |||||||| || || || || |||||| || || |||||||| || ||||||||| Sbjct 1361 GATACTATTGACCATGTGAAGGCCAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAG 1420 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| ||||| ||||| || | | | | | ||||||||| Sbjct 1421 CAGAGGTTGATCTTTGCCGGAAAACAGCTCGAGGACGGACGCACTCTTGCCGATTACAAC 1480 Query 25355 ATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGGAA 25403 || | || |||||||| |||| | || || | | |||||||||| Sbjct 1481 ATCTAGAAGGAATCCACTCTTCACCTCGTCCTACGTCTCAGAGGAGGAA 1529 >seq679059 Length=136279 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || || | ||||| | ||||| || | | Sbjct 54497 ATGCAGATCTTTGTCAAAACCCTTACTGGCAAGACCATCACTCTGGAAGTTGAGAGCTCC 54556 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| |||||| || |||||||| || || |||||||| Sbjct 54557 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGACAAAGAGGGGATTCCAACCGATCAG 54616 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| ||||||||||| |||| | | | | ||||||||| Sbjct 54617 CAGAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGACGCACTCTTGCCGATTACAAC 54676 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| || ||||| || |||| Sbjct 54677 ATTCAGAAGGAATCGACACTTCA 54699 Score = 87.8 bits (96), Expect = 2e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| ||||| | || || || | ||||| | ||||| || | | Sbjct 120053 ATGCAGATCTTTGTCAAAACCCTTACTGGCAAGACCATCACTCTGGAAGTTGAGAGCTCC 120112 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || ||| | || ||| |||||| || |||||||| || || |||||||| Sbjct 120113 GATACAATTGAGAATGTCAAAGCTAAAATTCAAGACAAAGAGGGGATTCCAACCGATCAG 120172 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | ||| ||||||||||| |||| | | | | ||||||||| Sbjct 120173 CAGAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGACGCACTCTTGCCGATTACAAC 120232 Query 25355 ATTCAAAAAGAATCCACCATTCA 25377 ||||| || ||||| || |||| Sbjct 120233 ATTCAGAAGGAATCGACACTTCA 120255 >seq1197656 Length=450275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 140/199 (70%), Gaps = 2/199 (1%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 ||||| | ||||| || || || || ||||| | ||||| | || || || | Sbjct 440984 ATGCAGATATTTGTGAAGACTTTGACGGGAAAGACAATCACACTGGAGGTTGAGAACTCT 441043 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||| || || | || || || ||| || || || || || || || |||||| Sbjct 441044 GATACGATTGATAACGTGAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 441103 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGC-GATTACAA 25353 || || ||||||| || ||||| || || ||||||| |||| | ||| |||||||| Sbjct 441104 CAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAAGATGGGAGAACCCT-AGCTGATTACAA 441162 Query 25354 TATTCAAAAAGAATCCACC 25372 ||||||||| ||||||||| Sbjct 441163 TATTCAAAAGGAATCCACC 441181 >seq265356 Length=295507 Score = 86.0 bits (94), Expect = 5e-12 Identities = 137/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 25175 ATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGCCAAC 25234 |||||| | ||||| ||||| | || ||||| | |||||| ||||||| || | Sbjct 165246 ATGCAAATCTTTGTGAAAACCCTGACTGGAAAGACCATCACGCTCGAAGTTGAGAGCTCT 165305 Query 25235 GATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGATCAG 25294 ||||||||||| | || || ||| ||| || || ||||| || || || |||||| Sbjct 165306 GATACTATCGATAATGTGAAGGCAAAGATTCAGGACAAGGAGGGGATTCCCCCGGATCAG 165365 Query 25295 CAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTACAAT 25354 || || | || | | || || ||||| ||||||| |||| | | || |||||| Sbjct 165366 CAGAGGTTGATCTTTGCAGGGAAGCAACTTGAAGATGGAAGAACTCTTGCAGACTACAAT 165425 Query 25355 ATTCAAAAAGAATCCAC 25371 ||||| || || || || Sbjct 165426 ATTCAGAAGGAGTCAAC 165442 >seq1192815 Length=22216 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 25171 CAACATGCAAGTGTTTGTAAAAACATTAACCGGAAAATCGATCACGATCGAAGTCGAAGC 25230 ||| |||||| | || || || || |||||||| || | || || | ||||| ||| | Sbjct 9880 CAAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATC 9939 Query 25231 CAACGATACTATCGAGCAAGTAAAACAAAAAATTACCGATAAAGAGGGTATACCGCCCGA 25290 || ||||| || | || || || || || || || ||||| || || || Sbjct 9940 TTCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGA 9999 Query 25291 TCAGCAAAGACTCATTTACGGCGGCAAACAACTCGAAGATGATAGAAATGTCAGCGATTA 25350 || |||||| | || | | || || ||| | ||||||| ||||| | | ||| || Sbjct 10000 CCAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTA 10059 Query 25351 CAATATTCAAAAAGAATCCACCATTCATTTAGTGTTAAGATTGAGAGGAGG 25401 ||| || ||||| ||||| || | || || || || ||||||||||| || Sbjct 10060 CAACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 10110 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 438213991672800