Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_026430.1 Length=125767 Score E Sequences producing significant alignments: (Bits) Value seq1192815 109 4e-19 seq842679 104 2e-17 seq878211 93.3 3e-14 seq913050 89.7 4e-13 seq1122789 87.8 1e-12 seq485728 87.8 1e-12 seq679059 86.0 5e-12 >seq1192815 Length=22216 Score = 109 bits (120), Expect = 4e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 106257 AAAATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCC 106316 || ||||||||||| || || || || || || ||||| |||||| ||||| ||| | Sbjct 9881 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 9940 Query 106317 GGCGATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGAT 106376 || || ||| | | || || || || ||||| ||||| | || ||| Sbjct 9941 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 10000 Query 106377 CAACAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTAC 106436 |||||||| | || | ||| || || ||||| |||||| || |||| || ||| ||| Sbjct 10001 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 10060 Query 106437 AACATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 ||||| ||||| |||||||| ||||| || || ||||| || |||| || Sbjct 10061 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 10110 >seq842679 Length=263869 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 |||||||| ||||| ||||| |||| ||||||||||| || | ||| || | Sbjct 131446 ATGCAAATCTTTGTCAAAACGCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCT 131387 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| |||||| |||||||||||| | || ||||||| Sbjct 131386 GATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 131327 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 || |||||||||| ||| ||||| || | || ||| | ||| | | ||||||||| Sbjct 131326 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACACTTGCTGATTACAAC 131267 Query 106440 ATACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || || |||||||| || || | || ||| | || || || || Sbjct 131266 ATTCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGG 131220 >seq878211 Length=3116 Score = 93.3 bits (102), Expect = 3e-14 Identities = 152/219 (69%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 106268 TTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGATTCTGT 106327 |||||| || || |||||||| |||||||| || ||||| ||| | || || | Sbjct 1086 TTTTGTCAAGACTTTGACTGGTAAGACCATCACTTTGGAAGTTGAATCTTCTGACACTAT 1145 Query 106328 TGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACAAAGGCT 106387 || | | || || ||| ||| ||||| ||||| | || ||| |||||||| | Sbjct 1146 TGACAATGTCAAGTCAAAGATTCAAGACAAGGAAGGTATCCCACCTGACCAACAAAGATT 1205 Query 106388 TATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACATACAAAA 106447 || | ||| || || ||||| ||||| || ||| || || |||||||| ||||| Sbjct 1206 GATCTTTGCTGGTAAGCAATTGGAAGACGGTAGAACCTTGTCTGACTACAACATTCAAAA 1265 Query 106448 AGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 |||||| || | || ||||| ||||| || |||| || Sbjct 1266 AGAATCCACTTTGCACTTAGTCTTGAGATTGAGAGGTGG 1304 >seq913050 Length=592780 Score = 89.7 bits (98), Expect = 4e-13 Identities = 138/197 (70%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || |||||||| || ||||| || ||||| || || |||| || | Sbjct 269798 ATGCAGATATTTGTTAAGACGTTGACGGGTAAGACGATCACACTGGAGGTTGAGAGCTCT 269857 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| |||||| | ||||||||||| | || |||||||| Sbjct 269858 GATACGATTGATAATGTGAAGGCTAAAATTCACTACAAAGAAGGCATTCCTCTTGATCAA 269917 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 |||||| |||||| ||| ||||| || | || ||| ||| | | ||||||||| Sbjct 269918 CAAAGGTTTATTTTTGCTGGCAAGCAGCTGGAGGATGACCGAACACTTGCTGATTACAAC 269977 Query 106440 ATACAAAAAGAATCTAC 106456 || || || |||||||| Sbjct 269978 ATCCAGAAGGAATCTAC 269994 >seq1122789 Length=489025 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || || ||||| || |||| || ||||| || || |||| || | Sbjct 336515 ATGCAGATATTCGTTAAGACGCTGACGGGTAAGACGATCACACTGGAGGTTGAGAGCTCT 336456 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| | |||||| |||||||||||| | || |||||| Sbjct 336455 GATACGATTGATAATGTGAAGGATAAAATTCAAGACAAAGAAGGCATTCCTCCTGATCAG 336396 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||||||||||| || ||||| || | || ||| | |||| | | ||||||||| Sbjct 336395 CAAAGGCTTATTTTTGTTGGCAAGCAGCTGGAGGATGGTCGAACTCTTGCTGATTACAAC 336336 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || || |||||||| || || Sbjct 336335 ATTCAGAAGGAATCTACCCTCCA 336313 >seq485728 Length=372489 Score = 87.8 bits (96), Expect = 1e-12 Identities = 141/203 (69%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 106260 ATGCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGC 106319 ||||| || ||||| || ||| |||| || ||||| || || |||| || Sbjct 86752 ATGCAGATGTTTGTAAAGACACTGACGGGTAAGACGATCACACTGGAGGTTGAGAGTTCT 86693 Query 106320 GATTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAA 106379 ||| | ||| | ||||| |||||| |||||||||||| | || | | |||| Sbjct 86692 GATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCTGCTCATCAG 86633 Query 106380 CAAAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAAC 106439 ||||||||||||| ||| ||||| || | || ||| | |||| | | ||||||||| Sbjct 86632 CAAAGGCTTATTTTTGCTGGCAAGCAGCTGGAGGATGGTCGAACTCTTGCTGATTACAAC 86573 Query 106440 ATACAAAAAGAATCTACACTACA 106462 || || || |||||||| || || Sbjct 86572 ATTCAGAAGGAATCTACCCTCCA 86550 >seq679059 Length=136279 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Plus Query 106262 GCAAATTTTTGTTAAAACATTGACTGGCAAGACCATTACCGTGGAAACAGAACCCGGCGA 106321 |||||| || ||||| || |||| || ||||| || || |||| || | || Sbjct 120566 GCAAATATTCGTTAAGACGCTGACGGGTAAGACGATCACACTGGAGGTTGAGAGCTCTGA 120625 Query 106322 TTCTGTTGGCCAAGTGAAACAAAAAATTGCCGACAAAGAAGGCGTGCCCGTTGATCAACA 106381 | | ||| | ||||| |||||| |||||||||||| | | |||||| || Sbjct 120626 TACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCTTCCTGATCAGCA 120685 Query 106382 AAGGCTTATTTATGCGGGCAAACAATTAGAAGATTCTAAAACTATGGGCGATTACAACAT 106441 ||||||||||| ||| ||||| || | || ||| | |||| | | ||||||||||| Sbjct 120686 AAGGCTTATTTTTGCTGGCAAGCAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACAT 120745 Query 106442 ACAAAAAGAATCTACACTACATTTAGTATTGAGGTTACGAGGAGG 106486 || || |||||||| || || | || ||| | || || || || Sbjct 120746 TCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGG 120790 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396265746732320