Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_027341.1 Length=130008 Score E Sequences producing significant alignments: (Bits) Value seq482539 102 7e-17 seq814033 93.3 3e-14 >seq482539 Length=482 Score = 102 bits (112), Expect = 7e-17 Identities = 93/116 (80%), Gaps = 1/116 (1%) Strand=Plus/Plus Query 26921 GATGGTGAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAGAATCA 26980 ||| | || ||| | ||| ||||||| | |||| |||| |||||| ||||||||||| Sbjct 205 GATAGCGAACTAATTGAAAAAGTAAAAGCTGAAACTCCACTAGAAACGACGAAAGAATCG 264 Query 26981 ACACAAGATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGGCAATAGAAAATGATT 27036 |||| | ||||||||||||| | ||| |||||||||| | |||||||||||||| Sbjct 265 GCACAGGCTTTCTTAGACTTAGC-GAAAGAACAAGGAAAAGTAATAGAAAATGATT 319 >seq814033 Length=989 Score = 93.3 bits (102), Expect = 3e-14 Identities = 85/106 (80%), Gaps = 1/106 (1%) Strand=Plus/Plus Query 26916 AACATGATGGTGAGCTAGTGGAAGAAGTAAAGGTAGAAAATCCAGTAGAAAGAACGAAAG 26975 ||| |||| |||| |||||||||||||| || |||| ||| | |||| ||||||| Sbjct 885 AACCTGATAGTGAACTAGTGGAAGAAGTGAAAAAGGAAACGCCAATCGAAACGACGAAAG 944 Query 26976 AATCAACACAAGATTTCTTAGACTTAACTaaaaaaaCAAGGAAAGG 27021 |||| |||| | ||||||||||||| || ||| |||||||||||| Sbjct 945 AATCGGCACAGGCTTTCTTAGACTTAGCT-AAAGAACAAGGAAAGG 989 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 409632403577985