Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_027388.1 Length=73050 Score E Sequences producing significant alignments: (Bits) Value seq308694 116 2e-21 seq1028318 87.8 8e-13 >seq308694 Length=301 Score = 116 bits (128), Expect = 2e-21 Identities = 206/296 (70%), Gaps = 6/296 (2%) Strand=Plus/Plus Query 70340 TAGGCCCAGACACTGATGATGCTGAAGTC-GCTGGCCTTCTTCGCAGAGGTAGCAAAGTC 70398 ||||||||||| ||||| |||||| ||| | | ||| ||| ||||||||||| Sbjct 9 TAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTC-TGCTTGATAGAAGTAGCAAAGTC 67 Query 70399 AGTGGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGCACGTTGCGTCGCATGTA--C 70456 |||||||| ||||||||| | || | |||||| | ||| | | | || | || | Sbjct 68 AGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAA--TAGAATCCAACTTAAAC 125 Query 70457 CAAGCCACCTCACCATCCTGGATGAGCCGGTCTTCGTCGGACATGATCTGGAGCATAAGC 70516 ||| | | |||||||| || || | || ||||| || |||||||| | ||||| ||| Sbjct 126 CAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGC 185 Query 70517 TCCTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACG 70576 ||||||||||| || || | || |||| ||||| | |||| | | ||| Sbjct 186 TCCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACG 245 Query 70577 AAGTCGTAGGTGAATCGGTCAGGCCATGCACCACGGAACTCTTCCCGCGAGCAGGG 70632 | || || ||||| || |||||||| | ||| | ||| |||||| ||||| || Sbjct 246 TACTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCCTTGGAGCAAGG 301 >seq1028318 Length=438 Score = 87.8 bits (96), Expect = 8e-13 Identities = 187/277 (68%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 42121 TCATGACGCAAGTGAACGACCATCTGGTCTTGGTTTCCGGTCTGTCCGCTACTGGCAAGT 42180 ||||| | ||| || ||||||||||| ||| | || ||| ||||||||||| | Sbjct 318 TCATGTCTCAAACCAATGACCATCTGGTATTGCTCGTAGGCAAGTCTGCTACTGGCAAAT 259 Query 42181 CTGCCTGTCTGCGGAATCTTCGGGAGCCGGAGAAGG--TCATCTACCTGAACTGCGAAGC 42238 | || | ||| | || ||| | |||| |||||| | || || |||||||| || Sbjct 258 CAGCATCTCTCCTTAACCTTGAGAAGCC--AGAAGGAGTGATGTATCTGAACTGTGAGAA 201 Query 42239 CGGTAAGCGGCTGCCGTTCAAGTCTCGCTTCATCGAGCGGACGGTGACCGATCCCTACCA 42298 ||| ||| |||| ||||| ||||| || |||||| ||||||||||| || Sbjct 200 CGGCAAGAAATTGCCTTTCAAAAGCAAGTTCATGCAGTTGACGGTTACCGATCCCTATCA 141 Query 42299 GATCCCCACTGTCTTCGATGCAGTGGTGGAGGGAAAGGTAGAAGCCCACACCATCATCAT 42358 | | | |||| | ||||| || |||| ||| ||| |||||| |||| Sbjct 140 GCTTTTTGAAGCCTTCCA---AGTGGCTGAATCAAAGCCAGAGATCCATACCATCGTCAT 84 Query 42359 CGACACCCTCACCTACCTGCTGGACATGTACGAGTCC 42395 ||||| || ||||| || ||||| |||| |||||| Sbjct 83 CGACAGTCTGACCTATCTTCTGGATATGTTTGAGTCC 47 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230113884215715