Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_027778.1 Length=124244 Score E Sequences producing significant alignments: (Bits) Value seq41879 140 3e-28 seq1017578 114 1e-20 seq555823 107 2e-18 seq159776 96.9 3e-15 seq443419 87.8 1e-12 >seq41879 Length=7953 Score = 140 bits (154), Expect = 3e-28 Identities = 448/690 (65%), Gaps = 34/690 (5%) Strand=Plus/Plus Query 19246 GGAGGATTGAGTAAAGAGTTTTCTGAAATCTTTCGTAGAGCATTTGT--GTCGCGTGTTT 19303 || || ||| |||||||||| || |||| || | ||||| |||| |||| | ||| Sbjct 3227 GGTGGTTTGGATAAAGAGTTTACTAAAATTTTCAGAAGAGCGTTTGCAAGTCGAATCTTT 3286 Query 19304 TTTC-TGCAGATGTCATTAAACAATTGGGATGTAAACATGTTCGTGGACTTTTGCTTT-- 19360 || | ||| | || || || |||| | |||||| || |||||| | Sbjct 3287 CCTCCTTCAGTT---ATAGAAAAACTGGGTATTTCTCATGTTAAAGG---TTTGCTATTG 3340 Query 19361 -ATGGGCCACCGGGTTGTGGAAAAACATTAATTGCGAGAGAACTTAGTAAATTACTTA-- 19417 | || || || ||| ||| || || |||||||| ||| | || ||| | | || | Sbjct 3341 TACGGTCCTCCAGGTACTGGTAAGACCTTAATTGCAAGAAAGATTGGTACAATGCTGAAT 3400 Query 19418 -CAAAACAACCTCCCAAAATTGTAAATGGTCCTGAAATCTTAAATAAATATGTAGGTCAA 19476 | ||| | || |||||| || |||||||| ||||| || | || || || ||| Sbjct 3401 GCTAAAGAGCC---CAAAATCGTCAATGGTCCAGAAATTTTGAGCAAGTACGTTGGTTCT 3457 Query 19477 TCGGAAGAAAATGTACGACGTTTGTTTGCTGACGCTGAAGAAGAACAAA-----AACGTT 19531 || |||||||| | || ||| ||| || || |||| |||| | | || | | Sbjct 3458 TCAGAAGAAAACATTCGTAATTTATTTAAGGATGCAGAAGCAGAATATAGGGCCAAGGGT 3517 Query 19532 TAGGGCGCAAAAGTTCTTTGCACATTATAATACTAGATGAATTGGACGCAATCTGTAAGC 19591 ||| || ||| || || ||||| || | ||||| |||| | | | |||| Sbjct 3518 GAGG-----AATCTTCCTTACATATTATTATTTTCGATGAGCTGGATTCTGTTTTCAAGC 3572 Query 19592 AAAGAGGTTC------TGGTGTAAATGGAGTACATGACACTGTTGTCAATCAACTCCTGT 19645 | |||||||| || || | ||| ||| |||| ||| || |||||| | | Sbjct 3573 AGAGAGGTTCAAGAGGTGATGGTACTGGTGTAGGGGACAATGTAGTTAATCAATTGTTAG 3632 Query 19646 CAAAATTAGACGGTGTTAACCAACTGAATAATATTTTAGTTATTGGCATGACTAATAGAC 19705 | ||| | || |||||| | ||| ||||||||||||| |||||||| ||||| ||| | Sbjct 3633 CTAAAATGGATGGTGTTGATCAATTGAATAATATTTTGGTTATTGGTATGACCAATCGTA 3692 Query 19706 TGGAATTAATAGACAGCGCCTTATTACGACCCGGTCGGTTGGAAATAAAGATCGAAATTA 19765 || ||||||||||| || | || || || ||| | || ||| | | | |||||| Sbjct 3693 AAGATTTAATAGACAGTGCTCTTTTGCGTCCAGGTAGATTTGAAGTCCAAGTTGAAATTC 3752 Query 19766 ACTTACCCGATGAATGTGGACGTGTGGAAATTTTAAACATACATACATCAACCATGCGAC 19825 | |||||||||||| ||| | | ||||||| |||| || || | ||| | Sbjct 3753 ATTTACCCGATGAAAAAGGAAGACTCCAAATTTTCGACATTCAGACGAAGAAAATGAGGG 3812 Query 19826 AAAATAACCTTTTAAATGACGATGTAGATCTAGAAGAAATTGCAGCGGCTACCAAAAACT 19885 ||||||| | | | |||||||| | ||| || | || || || ||||||| Sbjct 3813 AAAATAATATGATGAGCGACGATGTTAACTTAGCTGAGTTAGCTGCATTAACAAAAAACT 3872 Query 19886 ATAGCGGCGCAGAACTTGAGGGATTAGTGA 19915 || || || ||||||| ||||||| Sbjct 3873 TCTCTGGTGCTGAGATTGAGGGTTTAGTGA 3902 >seq1017578 Length=392639 Score = 114 bits (126), Expect = 1e-20 Identities = 219/319 (69%), Gaps = 8/319 (3%) Strand=Plus/Minus Query 43966 AGAAAATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCA 44025 ||| |||||||||| |||||||||| || || |||| || ||||| | ||| | Sbjct 317866 AGAGAATATTCATTGTGAAATGTACAACCTACTTCTAGAAACTTACATAAGGGATTCCAA 317807 Query 44026 CGAGAAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAAAGCAG 44084 ||||| || |||| ||||| || | || | | |||| | | || | |||| | Sbjct 317806 GGAGAAAGTGAGACTGTTCAATGCCATCAACACTATTCCCTGTGTTGCAAGA-AAAGTTG 317748 Query 44085 ACTGGGCCCTTAAATGGATAAA---TTCAAATGATTCTTTTGGAGAACGACTTGTCGCGT 44141 | |||||||| |||||| || ||| || ||| |||| | || |||| || | Sbjct 317747 AATGGGCCCTGTGATGGATTAAGGGTTC---TGGTTCATTTGCCAAGAGAATTGTTGCAT 317691 Query 44142 TTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGA 44201 ||||| ||| || || | |||||| | ||| ||| |||||||||||||| |||| Sbjct 317690 TTGCATGTGTTGAGGGTAGTTTCTTCTTTGGAAGCTTTTGTGCCATATTTTGGTTGAAGA 317631 Query 44202 AACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGCT 44261 ||| |||||||||| || || || ||||| ||||| | || | ||||| ||| Sbjct 317630 AACAGGGTTTGATGCAAGGTTTAACTTTTTCCAATGATCTTATTTCAAGAGATGAGGGCC 317571 Query 44262 TACATTGCGATTTTGCTTG 44280 | |||| |||||| |||| Sbjct 317570 TTCATTATGATTTTACTTG 317552 >seq555823 Length=1742627 Score = 107 bits (118), Expect = 2e-18 Identities = 251/375 (67%), Gaps = 8/375 (2%) Strand=Plus/Plus Query 43850 GTTTTGGCGTTTTTTGCTGCGAGCGACGGGATAGTCAATGAAAATTTGGTTAGTCGGTTT 43909 |||||||| |||||||| || || || || || || ||||| | | | | || Sbjct 1008182 GTTTTGGCCTTTTTTGCGGCCTCAGATGGTATTGTTTTGGAGAATTTAGCTGGAAGATTC 1008241 Query 43910 GCGCAAGAAGTTCAATTACCAGAAGCACGATGTTTTTATGGGTTTCAAATTGCCATAGAA 43969 | | || |||||| | | || || || || ||||||||||| ||| ||||||| Sbjct 1008242 TTGAAGGATGTTCAAATCCTGGAGGCTCGGGCATTCTATGGGTTTCAGATTTCCATAGAG 1008301 Query 43970 AATATTCATTCGGAAATGTACAGTCTTCTGATAGATACGTACATCAAAGATGGGCACGAG 44029 ||||||||||| |||||||||| || | |||| || ||||| | |||| | || Sbjct 1008302 AATATTCATTCTGAAATGTACAACCTAATTTTAGAAACTTACATAAGAGATTTCAAGGAA 1008361 Query 44030 AAGCATCGATTGTTTAATGCGATAGAAAC-AGTACCTGCGATTAAACATAAAGCAGACTG 44088 || | | |||| ||||| || | || | | ||| | | || | |||| || || Sbjct 1008362 AAAGAGAAACTGTTCAATGCCATCAACACTATTCGCTGTGTTGCAAGA-AAAGTTGAATG 1008420 Query 44089 GGCCCTTAAATGGAT---AAATTCAAATGATTCTTTTGGAGAACGACTTGTCGCGTTTGC 44145 |||||| |||||| | ||| || ||| ||| || || |||| | ||||| Sbjct 1008421 GGCCCTGCGATGGATTGAGAGTTC---TGGTTCATTTTCCGAGAGAATTGTTACATTTGC 1008477 Query 44146 AGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAGAAACG 44205 | ||| || || ||||| || || ||| ||| ||||| |||||||| |||||| | Sbjct 1008478 ATGTGTTGAGGGTATTTTATTCTCTGGAAGATTTTGTGCCATGTTTTGGTTGAAGAAATG 1008537 Query 44206 AGGTTTGATGCCTGG 44220 || ||||| || || Sbjct 1008538 GGGCTTGATTCCAGG 1008552 >seq159776 Length=731372 Score = 96.9 bits (106), Expect = 3e-15 Identities = 123/168 (73%), Gaps = 1/168 (1%) Strand=Plus/Plus Query 44113 TGATTCTTTTGGAGAACGACTTGTCGCGTTTGCAGTTGTGGAAGGCATTTTCTTTTCAGG 44172 || ||| |||| || || |||| | |||||| | | || | |||||||| | || Sbjct 718048 TGGTTCATTTGTCGAGAGAATTGTTACATTTGCATGTATTGAGAGTATTTTCTTCTTTGG 718107 Query 44173 ATCGTTTGCGGCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTC 44232 | ||| |||||||||||||| |||||||| ||||||||||| || || || ||||| Sbjct 718108 AAACTTTTGTGCCATATTTTGGTTGAAGAAACGGGGTTTGATGCCAGGTTTAAC-TTTTC 718166 Query 44233 AAATGAGTTAATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 ||||| | || | ||||| ||||| ||||| ||||||||||| Sbjct 718167 CAATGAAATTATTTCAAGAGATGAGGGCTTTCATTGTGATTTTGCTTG 718214 Score = 87.8 bits (96), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 1/140 (1%) Strand=Plus/Plus Query 44141 TTTGCAGTTGTGGAAGGCATTTTCTTTTCAGGATCGTTTGCGGCCATATTTTGGTTAAAG 44200 |||||| | | || | |||||||| | ||| ||| |||||||||||||| ||| Sbjct 722731 TTTGCATGTATTGAGAGTATTTTCTTCTTTGGAAACTTTTGTGCCATATTTTGGTTGAAG 722790 Query 44201 AAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTAATAAGTCGTGATGAAGGC 44260 ||||| ||||||||| || |||| | ||||| |||||| | || | ||||| ||| Sbjct 722791 AAACGGGGTTTGATG-CTAGGTTTAACTTTTCCAATGAGCTTATTTCAAGAGATGAGGGC 722849 Query 44261 TTACATTGCGATTTTGCTTG 44280 || ||||| |||||| |||| Sbjct 722850 TTTCATTGTGATTTTACTTG 722869 >seq443419 Length=851766 Score = 87.8 bits (96), Expect = 1e-12 Identities = 78/98 (80%), Gaps = 0/98 (0%) Strand=Plus/Plus Query 44183 GCCATATTTTGGTTAAAGAAACGAGGTTTGATGCCTGGGTTGACGTTTTCAAATGAGTTA 44242 |||||||||||||| |||||||| || |||||||| || || || ||||| |||||| | Sbjct 697206 GCCATATTTTGGTTGAAGAAACGGGGCTTGATGCCAGGTTTAACTTTTTCCAATGAGCTT 697265 Query 44243 ATAAGTCGTGATGAAGGCTTACATTGCGATTTTGCTTG 44280 || | ||||| ||| | ||||| ||||||||||| Sbjct 697266 ATTTCAAGAGATGAGGGCCTTCATTGTGATTTTGCTTG 697303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 391465600923325