Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq930373 197 2e-45 seq115151 84.2 3e-11 seq759392 82.4 9e-11 seq284582 82.4 9e-11 seq137683 82.4 9e-11 >seq930373 Length=6908 Score = 197 bits (218), Expect = 2e-45 Identities = 830/1300 (64%), Gaps = 34/1300 (3%) Strand=Plus/Minus Query 118182 TAGATATTGGTCGTGTATGGCTCAAAGCACTCATTGTTACCCAAGATTTGGGCTGTGGAG 118241 || ||||||| ||| ||| || || || ||||| | |||||| ||||||| |||||| Sbjct 2158 TACATATTGGAAGTGACTGGTTCGAAACATTCATTATAACCCAATATTTGGGATGTGGAT 2099 Query 118242 GCTGTGGGCATGGGTGCCATGAGAAGGCTGTTACGGAGACCCTTTTCCCTAATG-CGTTC 118300 || || ||||| ||||||||| ||| || | | ||| | | | | || | || Sbjct 2098 GCAGTAGGCATTGGTGCCATGGTCAGGGAATTTCTAATACCATGCTTCATGATATCTTTT 2039 Query 118301 CTTGAGAGCGTCCCAGTCGTAGTTGAGCTTTGTCTCCCCCTGCCACATATCAAACTGGAG 118360 ||| || | |||||| || | || | | | | ||||||||||||||| || Sbjct 2038 CTTAAG-GTGTCCCAATCCCACATGCCGTAGGGTTTTTGGTCCCACATATCAAACTGTAG 1980 Query 118361 GATACCTTGGGACGCTGGCGATCCCTCAAATGTCTCATATGGGCCCTCAACCTCCGCCAA 118420 |||||||| || || || ||||| | || || || ||||| || || || || | Sbjct 1979 TATACCTTGAGAAGCAGGAGATCCTTGGAAAGTTTCGTATGGACCGTCCTTCTGAGCTAG 1920 Query 118421 TTCGGAGCTCGCCTCGAGGGCTGCGTGATACATTGTTTCAAAAATGCGAGCATTCATTGC 118480 ||| | || || | || || ||||| || |||||||| || | ||| | Sbjct 1919 TTCACAAGAAGCTTCCATGGAGGCATGATAAATAGTTTCAAAGATTTGGATATTTAGCAA 1860 Query 118481 CTTGGCCTCGTCGGAATCAAACGCGAGTCGGCACAAAATAAATACATCCGCGAGACCTTG 118540 ||| || || |||||||| | | || ||| || || || ||||||||||| Sbjct 1859 ACGGGCTTCCTCAGAATCAAATGGCAAACGTAACAGCATGAAAGTGTCAGCGAGACCTTG 1800 Query 118541 GACACCGAGGCCAATTGGGCGATGTCTCATATTAGACTTCCGAGCGGTCTCCACGGGATA 118600 ||||| | ||||||| | |||||||||||| || || | || || || || || Sbjct 1799 AACACCCAAAGCAATTGGTCTATGTCTCATATTGGATTTTCTCGCTTCTTCAACAGGGTA 1740 Query 118601 AAAATTCCTATCGATAACCCTATTTAGATTTTTGGTGACAACCTTTGTGATTTCATGAAG 118660 |||| | ||| || || || |||| ||| || ||||| || | |||||||| | Sbjct 1739 GTAATTACGATCAATGACTCTGTTTAAATTACGAGTAACAACTTTAGCAATTTCATGTAA 1680 Query 118661 CTTTTCGTAATCAAAACTGCGAGTCT---------------CTTCATTGACATACTTAGG 118705 |||| | | | | || ||||| |||| ||| || || || Sbjct 1679 TTTTTTGAAGTTGTATGTGGAAGTCTTACCATCCTCAGAAGTTTCAATGA-ATGCT--GG 1623 Query 118706 AAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTTATCAGTGTACTCTATAAT 118765 | ||| | || |||| ||||| |||| || ||||| | | | ||| || | ||| Sbjct 1622 TAAGGCAACGGAAGCCAAGTTACAAACAGCAGTTTCATCTGGAGCTGAGTATTCAACAAT 1563 Query 118766 TTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTTTTGATTTGACTTTGTGTT 118825 ||| ||| |||||||| ||| ||| || ||||| |||||||| || ||| |||| Sbjct 1562 TTCACAGCATAAGTTTGATGACTTGATGACACCTAAGTTTTTTTGATTAGATTTTCTGTT 1503 Query 118826 ACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGTTTGGGACTTGAGAATAGC 118885 ||| ||||||||||||| | | | || || || || || ||||| | | | ||| | Sbjct 1502 ACAAGCATCCTTGTAAACAACGAAAGGTGTACCAGTTTCAGTTTGAGCTTCCAAAATGGA 1443 Query 118886 CTTCCAGACATCGGCAGCTGGCACAGTGGCGTTGGCTCGCCCCTCTTCCTCGTACTTTGT 118945 | ||| | | ||| | ||| || | || || |||| |||||| || Sbjct 1442 ATACCATAATTTTTGGGCTTTGATAGT---CTTACCACGACCTTCTTTCTCGTAGCGGGT 1386 Query 118946 GTAGAGGGCTTCAAACTCTTCACC--CACGGCCTCTGAGAGCCCTGGTGCCTTAT-CTGG 119002 || || || |||||||| ||||| || | || | | || || | || || ||| Sbjct 1385 ATATAGAGCCTCAAACTCGTCACCGTAACAATCGCTTAAA--CCAGGAG-CTGATGTTGG 1329 Query 119003 GCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATGAAGAGGTCTGGGATCCA 119062 |||| | | ||| ||| || || || ||||||||||| || || || ||||| Sbjct 1328 AGAGAATAATGTCCAGGTCCCATTTTCTTCGACACGCTTCATGAAAAGATCAGGAATCCA 1269 Query 119063 GAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCCTGATTGAGACGCAACTC 119122 || || | ||| | ||| | ||| ||| || | || || || | | || Sbjct 1268 TAGAGCAGGGAACAAATCTCTTGCACGAATTTCCTCTTTACCGTGGTTCTTCCTAATATC 1209 Query 119123 CAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACCGCGATTG-ACC---CCT 119178 | ||| || | ||||| || ||||| ||||||||||| | || | | ||| || Sbjct 1208 AATAAAATCAAATATATCAGCATGCCATGGTTCCAGGTAAAGGGCAAACGCACCAGGTCT 1149 Query 119179 TACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAATACACGAAGCATTGGAA 119238 | | |||| |||||| ||||| | |||||| || || ||||||| ||| |||| Sbjct 1148 T-TTATTACCACCCTGGTCAACATAACGGGCAGTGTTATTGAAAACACGAATCATAGGAA 1090 Query 119239 TGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTTATTGGCTCTGACATCGT 119298 | | ||| | || || ||||| || ||| ||| | | | | | | | Sbjct 1089 TTAAACCGTTAGAAGTACCGTTTGTACCAGCAATGTAAGAACCAGTTGAACGAATGTTAT 1030 Query 119299 GGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGCGCACTCCGTGAGACTGC 119358 |||| || | ||||||||| || || || || || || || ||| | | || Sbjct 1029 GGATATGTAGACCAATACCACCAGCAGTTTTGGAAATCAAAGCACATTCCTTCAAGGTGT 970 Query 119359 CGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAAGCAGCTCGACATTTGAG 119418 |||| ||||| ||||| ||||| |||| | || | | ||| || |||||||||| Sbjct 969 CGTAAATCCCCTCGATAGAGTCCTCCTTCATGGCAACCAAGAAACAAGAGGACATTTGAG 910 Query 119419 GCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTG 119458 | | || ||||| || ||||| | ||||| | ||||| Sbjct 909 GTTTTGGAGTACCGGCATTGAACAACGTTGGAGAGGCGTG 870 >seq115151 Length=432557 Score = 84.2 bits (92), Expect = 3e-11 Identities = 224/337 (66%), Gaps = 8/337 (2%) Strand=Plus/Minus Query 14096 TCAAGGATATCAATGCGGTTCGTCGCCGCGATGACAACGATGCCCGTCTCGTTATCAAAG 14155 ||||| |||||| ||| || || | || |||| ||| || || | ||||| Sbjct 319866 TCAAGTATATCAGCCGTGTTGGTTGCGGTAATCACAATGATACCAGTGTTCCCTTCAAAT 319807 Query 14156 CCATCCATCTCAGTCAAGAGTTGATTGATGGTTTGTTCGCGTTCATCATTCGC---AGGC 14212 |||||||| || || | || |||| | | ||||||| || |||||||| | | Sbjct 319806 CCATCCATTTCGGTAAGAAGCAGATTCAGGATTTGTTCTCGCTCATCATTTCCTCCACCT 319747 Query 14213 ATACCACCCGCACTGCGTTGCTTACCGACGGCGTCAATTTCATCGATGAAAACGATACAT 14272 |||||| | || | | | |||| || || ||||||||||| |||||||| || || Sbjct 319746 ATACCAGTTCCTCT-CAT--CCTACCAACAGCATCAATTTCATCCATGAAAACAATGCAA 319690 Query 14273 GGTTGATTTTCACGGGCAACTTCAAAGATATCTCGCACTCTCTTGGCACCGACACCCACA 14332 || |||||| ||| || || | || ||||||| || || | ||| ||| Sbjct 319689 GGGGCATTTTCTTTGGCCTTTTTGAATAGCTCAAGCACTCTAGATGCTCCAATACCAACA 319630 Query 14333 AACATCTCCACAAAATTGGCGGCGGAACATTG-GATGAAGGGGACGTTAGATTCACCCGC 14391 |||||||| ||||||| | | | || | || |||||| || ||| ||| || | Sbjct 319629 AACATCTCAACAAAATCAG-ACCTTGAGATAGAGAAGAAGGGTACACTAGCTTCCCCTAC 319571 Query 14392 GATGGCTCGGGCGAGGAGGGTCTTCCCCGTCCCTGGT 14428 ||||| || || | |||||||| ||||||||| Sbjct 319570 AATGGCCTTTGCTAGCAAAGTCTTCCCAGTCCCTGGT 319534 >seq759392 Length=161938 Score = 82.4 bits (90), Expect = 9e-11 Identities = 229/351 (65%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||||| || ||| || |||| || ||||| ||||||||| || | ||| Sbjct 23278 CCCTCTTACTTGTATTTCATGTACAGTTTCTCAAATTCTTCACCCCAACAATCAGCAAGC 23219 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || ||||| | || || || || | | |||| | | ||||| |||| ||||| Sbjct 23218 CCAGGTGCTTCATTGGGACAAAATAATGTCCATGTATAATTCTCCTGGACCCTTTTCATA 23159 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||||||||| | ||| || || | | ||||| || | | ||||| | ||| Sbjct 23158 AAGAGGTCTGGCACCCAAAGAGCAAAATATAGATCACGTGCTCTATTCTCTTCCTTCCCA 23099 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 23098 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 23039 Query 119166 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | | ||||| | | ||| | |||| ||||| | ||||| | || ||| Sbjct 23038 GCAAAGGCACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTAACATTGAAT 22979 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 || | | |||||| | ||||||| ||| ||||||||| || || ||| Sbjct 22978 ACCCTCAACATTGGCACAATACCATTAGATGTGCCATTTGTTCCTCGGATA 22928 >seq284582 Length=29610 Score = 82.4 bits (90), Expect = 9e-11 Identities = 229/351 (65%), Gaps = 3/351 (1%) Strand=Plus/Plus Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||||| |||||| || |||| || ||||||||||||||| || | ||| Sbjct 3076 CCCTCTTGCTCGTATTTCATGTACAGTTTCTCAAACTCTTCACCCCAACAATCAGCAAGC 3135 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || |||| | || | || || | | |||| | | ||||| |||| ||||| Sbjct 3136 CCAGGTGTTTCATTGTGACAAAATAATGTCCATGTAGAATTCTCCTGGACCCTTTTCATA 3195 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||||||||| | ||| || || | || ||||| || | ||||| | ||| Sbjct 3196 AAGAGGTCTGGCACCCAAAGAGCAAAAAATAGATCACGTGCTCTGTTCTCTTCCTTCCCA 3255 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 3256 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 3315 Query 119166 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 || | || ||||| | | ||| | |||| ||||| | ||||| | || ||| Sbjct 3316 GCAAAGGAACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTATCATTGAAT 3375 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 || | | |||||| ||||||| ||| ||||||||| || || ||| Sbjct 3376 ACCCTCAACATTGGCGCAATACCATTAGATGTGCCATTTGTTCCTCGGATA 3426 >seq137683 Length=1137553 Score = 82.4 bits (90), Expect = 9e-11 Identities = 229/351 (65%), Gaps = 3/351 (1%) Strand=Plus/Minus Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||||| |||||| ||| |||| || ||||| ||||||||| || | ||| Sbjct 947933 CCCTCTTGCTCGTATTTTATGTACAGTTTGTCAAATTCTTCACCCCAACAATCAGCAAGC 947874 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || ||||| | || || || || | | |||| | | ||||| |||| ||||| Sbjct 947873 CCAGGTGCTTCATTGGGACAAAATAATGTCCATGTAGAATTCTCCTGGACCCTTTTCATA 947814 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 ||||||||||| | ||| || | | || ||||| || | ||||| | ||| Sbjct 947813 AAGAGGTCTGGCACCCAAAGAGAAAAAAATAGATCACGTGCTCTGTTCTCTTCCTTCCCA 947754 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || | ||| |||| ||| || | | ||| || ||||| || || | ||||| Sbjct 947753 TGGTTCTTTCTCAAATCCAGAAACTCAAAAACATCTGCATGCCATGGCTCTAAGTACATG 947694 Query 119166 GCGATTGACCCCTTAC---GACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAAT 119222 | | | ||||| | | ||| | |||| ||||| | ||||| | || ||| Sbjct 947693 GAAAAGGCACCCTTCCTCTTGCCTCCACCTTGGTCAACATATCGAGCAGTATCATTGAAT 947634 Query 119223 ACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATA 119273 || | | |||||| | ||||||| ||| ||||||||| || ||||| Sbjct 947633 ACCCTCAACATTGGCACAATACCATTAGATGTGCCATTTGTTCCTTGAATA 947583 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 608875235417400