Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_028885.1 Length=72378 Score E Sequences producing significant alignments: (Bits) Value seq308694 105 3e-18 seq1028318 82.4 3e-11 >seq308694 Length=301 Score = 105 bits (116), Expect = 3e-18 Identities = 199/293 (68%), Gaps = 0/293 (0%) Strand=Plus/Minus Query 1585 CCGTGCTCGCGGGAAGAGTTCAGGGGTGCATGGGCTGACCGATTCACCTACGACTTCGTG 1644 || ||||| |||||| ||||| ||| | ||| |||| || ||||| || || | ||| Sbjct 301 CCTTGCTCCAAGGAAGACTTCAGAGGTTCCTGGCCTGATCGTTTCACGTATGAGTACGTC 242 Query 1645 TTGCAGAAGTACACCCTGGCCAAGAAGGCAGGGAAGATCGAGACGTTCAACCAAGAGCTT 1704 | | |||| | ||||| |||| || | || || |||||||| ||||| Sbjct 241 AGGGATGAGTATGACAAGGCCATGAAGAGTGGTCGTGTGGATACCTTCAACCAGGAGCTA 182 Query 1705 ATGCTCCAGATCATGTCCGACGAAGACCGACTCATCCAGGATGGTGAGGTGGCTTGGTAC 1764 ||||| | |||||||| || ||||| || | || || |||||||| | | ||||| Sbjct 181 ATGCTACGAATCATGTCTGAAGAAGATCGCATGATTCAAGATGGTGATATTGGTTGGTTT 122 Query 1765 ATGCGGCGCAACGTACTGGACAATAAGAAGCGGTACAACTTCTACATCACCACTGACTTC 1824 | | | | ||| | || ||| | || | ||||||||||||||||||||||| Sbjct 121 AAGTTGGATTCTATTCTGAAGAACAAGGAACGATTTAACTTCTACATCACCACTGACTTT 62 Query 1825 GCTACCTCTGCGAAGAAGGCGAGTGACTTCAGTGTGATCAGTGTCTGGGCTTA 1877 ||||| ||| ||| || ||||||| ||| ||| |||||||| || Sbjct 61 GCTACTTCTATCAAGCAGAAAGCTGACTTCTCTGTCATCTCAGTCTGGGCCTA 9 >seq1028318 Length=438 Score = 82.4 bits (90), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 29832 GGACTCGTACATGTCCAGCAGGTAGGTGAGGGTGTCGATGATGATGGTGTGGGCTTCTAC 29891 |||||| |||| ||||| || ||||| || ||||||||| |||||| ||| ||| Sbjct 47 GGACTCAAACATATCCAGAAGATAGGTCAGACTGTCGATGACGATGGTATGGATCTCTGG 106 Query 29892 CTTTCCCTCCACCACTGCATCGAAGACAGTGGGGATCTGGTAGGGATCGGTCACCGTCCG 29951 |||| || ||||| | |||| | | ||| ||||||||||| |||||| Sbjct 107 CTTTGATTCAGCCACT---TGGAAGGCTTCAAAAAGCTGATAGGGATCGGTAACCGTCAA 163 Query 29952 CTCGATGAAGCGAGACTTGAACGGCAGCCGCTTACCGGCTTCGCAGTTCAGGTAGATGA- 30010 || ||||| ||||| |||| ||| ||| || |||||||| || || | Sbjct 164 CTGCATGAACTTGCTTTTGAAAGGCAATTTCTTGCCGTTCTCACAGTTCAGATACATCAC 223 Query 30011 -CCTTCTCCGGCTCCCGGAGATTCCGCAGACAGGCAGACTTGCCAGTAGCGGACAGACCG 30069 |||||| |||| | || || | ||| | || || ||||||||||| ||| || Sbjct 224 TCCTTCT--GGCTTCTCAAGGTTAAGGAGAGATGCTGATTTGCCAGTAGCAGACTTGCCT 281 Query 30070 GAAACCAAGACCAGATGGTCGTTCACTTGCGTCATGA 30106 | ||| ||||||||||| || ||| | ||||| Sbjct 282 ACGAGCAATACCAGATGGTCATTGGTTTGAGACATGA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227995894732035