Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_029046.1 Length=50827 Score E Sequences producing significant alignments: (Bits) Value seq1131221 82.4 2e-11 seq1107884 82.4 2e-11 seq1074805 82.4 2e-11 seq850183 82.4 2e-11 seq719850 82.4 2e-11 seq269569 82.4 2e-11 seq174674 82.4 2e-11 seq961237 80.6 9e-11 seq357599 80.6 9e-11 >seq1131221 Length=201 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | ||||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 75 CGGAGTAGAGTAGTCTGGTAGCTCGCGAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 134 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 135 CCGTCTCCGC 144 >seq1107884 Length=201 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| |||||| ||||||| |||| Sbjct 151 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACAGGTTCAAATC 92 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 91 CCGTCTCCGC 82 >seq1074805 Length=202 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || |||||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 87 CGGAGTAGAGTAGTCCGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 146 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 147 CCGTCTCCGC 156 >seq850183 Length=200 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| |||||| | |||||||||| Sbjct 155 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCGAATC 96 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 95 CCGTCTCCGC 86 >seq719850 Length=202 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| |||| |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 87 CGGAGTAGAGTAGCCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 146 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 147 CCGTCTCCGC 156 >seq269569 Length=204 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| |||||||| ||||| |||| Sbjct 151 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCGCGGGTTCAAATC 92 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 91 CCGTCTCCGC 82 >seq174674 Length=201 Score = 82.4 bits (90), Expect = 2e-11 Identities = 60/70 (86%), Gaps = 0/70 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| ||||||| | ||||| |||| Sbjct 140 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTCGAGGTCACGGGTTCAAATC 81 Query 21210 CTGTCTCCGC 21219 | |||||||| Sbjct 80 CCGTCTCCGC 71 >seq961237 Length=200 Score = 80.6 bits (88), Expect = 9e-11 Identities = 65/78 (83%), Gaps = 2/78 (3%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 173 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 114 Query 21210 CTGTCTCCGC--AACCAG 21225 | |||||||| |||||| Sbjct 113 CCGTCTCCGCCAAACCAG 96 >seq357599 Length=201 Score = 80.6 bits (88), Expect = 9e-11 Identities = 61/72 (85%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 21150 CGGAGTAGAGCAGCCCGGTAGCTCGCGTGGCTCATAACCACGAGGTCGCAGGTTCGAATC 21209 |||||||||| || | |||||||||| ||||||||||| |||||| | ||||| |||| Sbjct 170 CGGAGTAGAGTAGTCTGGTAGCTCGCAAGGCTCATAACCTTGAGGTCACGGGTTCAAATC 111 Query 21210 CTGTCTCCGCAA 21221 | |||||||||| Sbjct 110 CCGTCTCCGCAA 99 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 160138058809970