Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_029101.1 Length=72192 Score E Sequences producing significant alignments: (Bits) Value seq308694 113 2e-20 seq1028318 82.4 3e-11 >seq308694 Length=301 Score = 113 bits (124), Expect = 2e-20 Identities = 203/295 (69%), Gaps = 4/295 (1%) Strand=Plus/Minus Query 9359 CCCTGCTCGCGGGAAGAGTTCCGTGGTGCATGGCCTGACCGATTCACCTACGACTTCGTG 9418 || ||||| |||||| ||| | ||| | |||||||| || ||||| || || | ||| Sbjct 301 CCTTGCTCCAAGGAAGACTTCAGAGGTTCCTGGCCTGATCGTTTCACGTATGAGTACGTC 242 Query 9419 TTGCAGAAGTACACCCTGGCCAAGAAGGCAGGGAAGATCGAGACGTTCAACCAAGAGCTT 9478 | | |||| | ||||| |||| || | || || |||||||| ||||| Sbjct 241 AGGGATGAGTATGACAAGGCCATGAAGAGTGGTCGTGTGGATACCTTCAACCAGGAGCTA 182 Query 9479 ATGCTCCAGATCATGTCTGACGAAGACCGGCTCATCCAGGATGGTGAGGTGGCTTGG--T 9536 ||||| | ||||||||||| ||||| || | || || |||||||| | | |||| | Sbjct 181 ATGCTACGAATCATGTCTGAAGAAGATCGCATGATTCAAGATGGTGATATTGGTTGGTTT 122 Query 9537 ACATGCGACGCAACGTGCTGGACAACAAGAAGCGGTACAACTTCTACATCACCACTGACT 9596 | | || | | | ||| | |||||| | || | |||||||||||||||||||||| Sbjct 121 AAGTTGGATTCTA--TTCTGAAGAACAAGGAACGATTTAACTTCTACATCACCACTGACT 64 Query 9597 TCGCTACCTCTGCGAAGAAGGCCAGTGACTTCAGCATCATCAGTGTCTGGGCTTA 9651 | ||||| ||| ||| || ||||||| ||||| |||||||| || Sbjct 63 TTGCTACTTCTATCAAGCAGAAAGCTGACTTCTCTGTCATCTCAGTCTGGGCCTA 9 >seq1028318 Length=438 Score = 82.4 bits (90), Expect = 3e-11 Identities = 186/277 (67%), Gaps = 7/277 (3%) Strand=Plus/Plus Query 37597 GGACTCGTACATGTCCAGCAGGTAGGTGAGGGTGTCGATGATGATGGTGTGGGCTTCTAC 37656 |||||| |||| ||||| || ||||| || ||||||||| |||||| ||| ||| Sbjct 47 GGACTCAAACATATCCAGAAGATAGGTCAGACTGTCGATGACGATGGTATGGATCTCTGG 106 Query 37657 CTTTCCCTCCACCACTGCATCGAAGACAGTGGGGATCTGGTAGGGATCGGTCACCGTCCG 37716 |||| || ||||| | |||| | | ||| ||||||||||| |||||| Sbjct 107 CTTTGATTCAGCCACT---TGGAAGGCTTCAAAAAGCTGATAGGGATCGGTAACCGTCAA 163 Query 37717 CTCGATGAAGCGAGACTTGAACGGCAGCCGCTTACCGGCTTCACAGTTCAGGTAGATGA- 37775 || ||||| ||||| |||| ||| ||| ||||||||||| || || | Sbjct 164 CTGCATGAACTTGCTTTTGAAAGGCAATTTCTTGCCGTTCTCACAGTTCAGATACATCAC 223 Query 37776 -CCTTCTCCGGCTCCCGGAGATTCCGCAGACAGGCAGACTTGCCGGTAGCGGACAGACCG 37834 |||||| |||| | || || | ||| | || || ||||| ||||| ||| || Sbjct 224 TCCTTCT--GGCTTCTCAAGGTTAAGGAGAGATGCTGATTTGCCAGTAGCAGACTTGCCT 281 Query 37835 GAAACCAAGACCAGATGGTCGTTCACTTGCGTCATGA 37871 | ||| ||||||||||| || ||| | ||||| Sbjct 282 ACGAGCAATACCAGATGGTCATTGGTTTGAGACATGA 318 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 227409665499945