Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_029304.1 Length=111246 Score E Sequences producing significant alignments: (Bits) Value seq434543 98.7 7e-16 seq679059 95.1 8e-15 seq307481 93.3 3e-14 seq304998 84.2 2e-11 seq678061 82.4 5e-11 seq265356 82.4 5e-11 >seq434543 Length=395133 Score = 98.7 bits (108), Expect = 7e-16 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||||||||| || ||||| ||| ||||||| | || ||||| ||| | Sbjct 384402 AATGCAGATCTTTGTGAAAACCCTGACTGGTAAAACTATTACACTGGAGGTCGAGAGCTC 384343 Query 27849 CG--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 | || || ||||| ||||| || || ||||| ||||| |||| ||| Sbjct 384342 TGACACCATTGACAAT--GTCAAGGCCAAGATCCAGGACAAGGAAGGAATTCCCCCGGAT 384285 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTAC 27966 || || || |||||||||| || || || |||| |||| | | | |||| | || ||| Sbjct 384284 CAACAGAGGCTAATTTTTGCTGGTAAGCAGCTGGAGGACGGAAGGACCTTGGCTGACTAC 384225 Query 27967 AACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 ||||| || || || ||| ||||| | ||| | ||| || | || || Sbjct 384224 AACATTCAGAAGGAATCCACCCTGCATCTTGTTCTTCGTCTGAGAGGTGG 384175 >seq679059 Length=136279 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| |||||||| || || || | || || || ||| || Sbjct 54497 ATGCAGATCTTTGTCAAAACCCTTACTGGCAAGACCATCACTCTGGAAGTTGAGAGCTCC 54556 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| |||||||| || |||| | || | Sbjct 54557 GATACAATTGAGAAT--GTCAAAGCTAAAATTCAAGACAAAGAGGGGATTCCAACCGATC 54614 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || ||||||||||||||| | || || | ||||| |||| |||||||| Sbjct 54615 AGCAGAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGACGCACTCTTG-CCGATTAC 54673 Query 27967 AACATCCAAAAAGA 27980 ||||| || || || Sbjct 54674 AACATTCAGAAGGA 54687 Score = 95.1 bits (104), Expect = 8e-15 Identities = 140/194 (72%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| || ||||| ||||| |||||||| || || || | || || || ||| || Sbjct 120053 ATGCAGATCTTTGTCAAAACCCTTACTGGCAAGACCATCACTCTGGAAGTTGAGAGCTCC 120112 Query 27850 GA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 || | || | ||| |||||| ||||| |||||||| || |||| | || | Sbjct 120113 GATACAATTGAGAAT--GTCAAAGCTAAAATTCAAGACAAAGAGGGGATTCCAACCGATC 120170 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCA-GCTTGTCCGATTAC 27966 |||| |||| || ||||||||||||||| | || || | ||||| |||| |||||||| Sbjct 120171 AGCAGAGGTTGATCTTTGCCGGAAAACAACTCGAGGATGGACGCACTCTTG-CCGATTAC 120229 Query 27967 AACATCCAAAAAGA 27980 ||||| || || || Sbjct 120230 AACATTCAGAAGGA 120243 >seq307481 Length=1856025 Score = 93.3 bits (102), Expect = 3e-14 Identities = 148/208 (71%), Gaps = 6/208 (3%) Strand=Plus/Minus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| |||||||| ||||| || || || | || || || ||| | Sbjct 1820019 AATGCAGATCTTTGTCAAAACTCTGACTGGCAAGACCATCACGCTCGAAGTTGAGAGCTC 1819960 Query 27849 CGA--CGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| | || ||||| || || ||||| ||||| || ||| |||| || Sbjct 1819959 CGATACTATTGACAAT--GTGAAGGCCAAAATCCAAGACAAGGAGGGTATTCCACCCGAC 1819902 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || |||||||||||||| | || |||| ||||| |||| ||||||| Sbjct 1819901 CAGCAGAGGTTGATATTTGCCGGAAAACAGCTCGAGGACGGACGCACTCTTG-CCGATTA 1819843 Query 27966 CAACATCCAAAAAGAGAGCACTTTGCAT 27993 ||||||||| || || |||| | ||| Sbjct 1819842 CAACATCCAGAAGGAATCCACTCTTCAT 1819815 >seq304998 Length=937332 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/229 (69%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 |||||||| ||||||||||| || ||||| ||| |||||| | || || || ||| | Sbjct 915457 ATGCAAATATTTGTGAAAACGCTAACTGGCAAAACCATTACATTGGAGGTGGAGAGCTCA 915516 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || ||| || || ||||| || || | ||| || | Sbjct 915517 GACACAATTGATAAT--GTTAAAGCTAAGATCCAGGACAAGGAGGGCATCCCGCCTGACC 915574 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| |||| |||||||| || ||||| |||| || | ||| | || ||||||| | Sbjct 915575 AGCAGAGGTTGATTTTTGCTGGTAAACAGCTGGAAGATGGACGTACTCTGGCCGATTATA 915634 Query 27968 ACATCCAAAAAGAGAGCACTTTGCATTTGGTTTTGCGTTTGCGTGGCGG 28016 |||| || || ||| ||| | || ||||| | ||| | || || || Sbjct 915635 ACATTCAGAAGGAGTCGACTCTACACTTGGTGCTCCGTCTTCGGGGTGG 915683 >seq678061 Length=572976 Score = 82.4 bits (90), Expect = 5e-11 Identities = 135/193 (70%), Gaps = 4/193 (2%) Strand=Plus/Plus Query 27790 ATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCACC 27849 ||||| |||||||||||||| |||||||| || || || | || ||||| ||| | Sbjct 353401 ATGCAGATTTTTGTGAAAACCCTTACTGGCAAGACGATAACTTTGGAAGTCGAGAGCTCA 353460 Query 27850 G--ACGATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAGC 27907 | || || | ||| || || || || || |||||||| ||||| || | Sbjct 353461 GATACCATTGATAAT--GTGAAGGCCAAGATCCAGGATAAAGAAGGCATTCCGCCTGACC 353518 Query 27908 AGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAGCTTGTCCGATTACA 27967 |||| || | |||||||| || |||||| |||| || | |||| |||| | ||||| | Sbjct 353519 AGCAGAGGCTTATTTTTGCAGGTAAACAACTGGAGGATGGCCGCACCTTGGCTGATTATA 353578 Query 27968 ACATCCAAAAAGA 27980 |||| || || || Sbjct 353579 ACATTCAGAAGGA 353591 >seq265356 Length=295507 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/195 (71%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 27789 AATGCAAATTTTTGTGAAAACTCTTACTGGGAAATGTATTACAATTGATGTCGAAAGCAC 27848 |||||| || ||||| ||||| || ||||| || ||||| | || || || ||| | Sbjct 165017 AATGCAGATCTTTGTTAAAACCCTGACTGGCAAGACCATTACTCTGGAAGTTGAGAGCTC 165076 Query 27849 CGAC--GATGTACAATCGGTCAAACAAAAAATAGCCGACAAAGAAGGTGTTCCGATGGAG 27906 ||| ||| ||||| || || ||||| || || || || |||| || Sbjct 165077 TGACACGATTGACAAT--GTTAAGGCCAAAATTCAAGATAAGGAGGGGATTCCACCCGAT 165134 Query 27907 CAGCAACGGTTAATTTTTGCCGGAAAACAATTGGACGACGAACGCAG-CTTGTCCGATTA 27965 ||||| |||| || ||||| ||||| ||| | || |||| ||||| |||| ||||||| Sbjct 165135 CAGCAGAGGTTGATCTTTGCTGGAAAGCAACTCGAGGACGGACGCACTCTTG-CCGATTA 165193 Query 27966 CAACATCCAAAAAGA 27980 |||||||||||| || Sbjct 165194 CAACATCCAAAAGGA 165208 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 350498893618455