Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_029996.1 Length=134272 Score E Sequences producing significant alignments: (Bits) Value seq304998 116 3e-21 seq434543 104 2e-17 seq842679 100 2e-16 seq307481 98.7 8e-16 seq458253 95.1 1e-14 seq1236130 91.5 1e-13 seq996803 91.5 1e-13 seq810261 89.7 4e-13 seq679059 89.7 4e-13 seq1197656 86.0 5e-12 seq753218 86.0 5e-12 seq277093 86.0 5e-12 >seq304998 Length=937332 Score = 116 bits (128), Expect = 3e-21 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || || | || | ||| || ||| || ||||| ||||||||||| Sbjct 714662 CATGCCACCTCTCAACCGGAGGACAAGATGCAGGGTGGATTCCTTTTGGATATTATAATC 714603 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| ||||| |||| || ||||| || || || || || ||||||||||| || | Sbjct 714602 AGCAAGGGTTCGGCCGTCTTCGAGCTGCTTCCCAGCGAAGATCAGACGCTGCTGATCAGG 714543 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 ||| | || ||||||||| ||| || ||||| ||| | | | || || ||| Sbjct 714542 GGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCCGAGCT-- 714486 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| ||||| | || || || || |||||||||||||| ||||| Sbjct 714485 -CTCAACTTCCAAAGTGATCGTCTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 714432 Score = 116 bits (128), Expect = 3e-21 Identities = 169/235 (72%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || || | || | ||| || ||| || ||||| ||||||||||| Sbjct 805936 CATGCCACCTCTCAACCGGAGGACAAGATGCAGGGTGGATTCCTTTTGGATATTATAATC 805877 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||| ||||| |||| || ||||| || || || || || ||||||||||| || | Sbjct 805876 AGCAAGGGTTCGGCCGTCTTCGAGCTGCTTCCCAGCGAAGATCAGACGCTGCTGATCAGG 805817 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 ||| | || ||||||||| ||| || ||||| ||| | | | || || ||| Sbjct 805816 GGGAATGCCTTCTTTGTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCCGAGCT-- 805760 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| ||||| | || || || || |||||||||||||| ||||| Sbjct 805759 -CTCAACTTCCAAAGTGATCGTCTTGCCAGTGAGTGTTTTAACAAAGATCTGCAT 805706 Score = 96.9 bits (106), Expect = 3e-15 Identities = 150/213 (70%), Gaps = 6/213 (3%) Strand=Plus/Minus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| ||||| || ||| || || || ||||||||||| || || ||| | || || Sbjct 915666 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 915607 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 |||||||| || ||||| || | | ||||||||| | || | || ||| |||||| Sbjct 915606 CAGCTGTTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 915547 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACT 39251 ||| || ||| | | | | || || ||| |||||| |||| || || | Sbjct 915546 GATCTTAGCTTTAACATTATCAATTGTGTCTGAGCT---CTCCACCTCCAATGTAATGGT 915490 Query 39252 TTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || || |||||||| ||||| |||||||| Sbjct 915489 TTTGCCAGTTAGCGTTTTCACAAATATTTGCAT 915457 Score = 95.1 bits (104), Expect = 1e-14 Identities = 164/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || | | || | ||| || ||| || || || ||||| || || Sbjct 714206 CATGCCACCTCTCAACCTGAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTC 714147 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| ||||| |||| || ||||| || || ||||| || |||||||||||||| | Sbjct 714146 GGCAAGAGTTCGGCCGTCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCAGG 714087 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | || || |||||| || || || | | | | || || ||| Sbjct 714086 GGGGATGCCTTCCTTGTCCTGAATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCT--- 714030 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| || || | |||||| | ||||| || || || ||||||||||| |||||||| Sbjct 714029 CTCGACCTCGAGAGTGATAGTCTTTCCGGTGAGGGTCTTAACAAAGATCTGCATCTT 713973 Score = 93.3 bits (102), Expect = 4e-14 Identities = 164/235 (70%), Gaps = 8/235 (3%) Strand=Plus/Minus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||||||||||| || | ||||| ||| || || ||||| || ||||||||||| Sbjct 595891 CATGCCTCCTCTTAGACGAAGCACCAGATGCAGGGTCGATTCTTTCTGAATATTATAATC 595832 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 || | || | | || || ||||| || || || || ||||| | ||||||||| | Sbjct 595831 AGCCAAGGTCCTGCCATCCTCCAGCTGCTTACCTGCGAAGATAAGCCTCTGCTGGTCAGG 595772 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCG-CCACCGTATC---GCTCG 39229 || | | || |||||| ||| || ||||| ||| | | | || || ||| Sbjct 595771 TGGAATTCCTTCCTTGTCCTGGATCTTGGCTTTGA-CGTTGTCAATGGTGTCCGAGCT-- 595715 Query 39230 ACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 ||| || |||| || || ||||||| || || |||||||||||||| ||||| Sbjct 595714 -CTCAACTTCCAATGTAATTGTTTTTCCAGTGAGAGTTTTAACAAAGATCTGCAT 595661 Score = 84.2 bits (92), Expect = 2e-11 Identities = 159/233 (68%), Gaps = 6/233 (3%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || | || | || || ||| || || || ||||| ||||||||| Sbjct 595659 CCACCTCTCAACCGGAGGACAAGGTGGAGGGTGGATTCCTTCTGGATATTGTAATCGGCA 595600 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || ||||| |||| || ||||| || || ||||| || ||||| |||||||||| ||| Sbjct 595599 AGGGTTCGGCCGTCCTCGAGCTGCTTTCCTGCAAAGATCAGACGTTGCTGGTCGGGGGGG 595540 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | | || |||||| ||| || || | | | | || || ||| ||| Sbjct 595539 ATCCCTTCCTTGTCCTGGATCTTAGCCTTAACATTATCGATGGTGTCAGAGCT---CTCG 595483 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 || || | ||||| | || || |||| ||||| ||||| || |||||||| Sbjct 595482 ACCTCGAGAGTGATGGTCTTGCCGGTCAAGGTTTTGACAAAAATCTGCATCTT 595430 >seq434543 Length=395133 Score = 104 bits (114), Expect = 2e-17 Identities = 171/244 (70%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||| |||| || | |||| ||| || || || ||||| || Sbjct 122020 AAATATCTGCATGCCTCCCCTTAGACGGAGGACCAGATGCAGGGTAGATTCCTTTTGGAT 122079 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || ||||| || ||||| |||| |||||||| || || |||||||| |||||||| Sbjct 122080 GTTGTAGTCGGCCAGGGTTCGGCCGTCCTCAAGCTGCTTTCCGGCAAATATCAGACGCTG 122139 Query 39165 CTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTAT 39223 |||||| ||||| | || || || ||| |||||| |||| | | | || | Sbjct 122140 CTGGTCAGGTGGAATCCCT-TCCTTATCCTGGATTTTGGCCTTGACATTGTCTATGGTGT 122198 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 || ||| || || | ||||| | || || || || ||||| |||||||| |||| Sbjct 122199 CGGAACTCTCAACCTCGAGAGTGATTGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCA 122258 Query 39284 TCTT 39287 |||| Sbjct 122259 TCTT 122262 Score = 91.5 bits (100), Expect = 1e-13 Identities = 168/244 (69%), Gaps = 2/244 (1%) Strand=Plus/Plus Query 39045 AAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTAT 39104 |||| | | || |||||| || | || | |||| ||| || || |||||||| || Sbjct 384846 AAATATCTGCATGCCTCCCCTCAGACGGAGAACCAGATGCAGAGTAGATTCTTTTTGGAT 384905 Query 39105 ATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTG 39164 || || |||||||| ||||| |||| || ||||| || || ||||| || |||||||| Sbjct 384906 GTTGTAGTCGGCAAGGGTTCGGCCGTCCTCGAGCTGCTTTCCAGCAAAAATCAGACGCTG 384965 Query 39165 CTGGTC-GGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTAT 39223 ||| || |||||| | || || || ||| ||| || |||| | | | || | Sbjct 384966 CTGATCAGGTGGGATCCCT-TCCTTATCCTGGATCTTGGCCTTGACATTGTCGATGGTGT 385024 Query 39224 CGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCA 39283 | ||| || || | ||||| | || || || || ||||| |||||||| |||| Sbjct 385025 CAGAACTCTCGACCTCGAGAGTGATTGTCTTGCCAGTGAGGGTTTTGACAAAGATCTGCA 385084 Query 39284 TCTT 39287 |||| Sbjct 385085 TCTT 385088 >seq842679 Length=263869 Score = 100 bits (110), Expect = 2e-16 Identities = 140/195 (72%), Gaps = 6/195 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || ||||| ||||||||||| | || |||||||| ||||| ||||| Sbjct 131256 TCCTTCTGAATGTTGTAATCAGCAAGTGTTCGACCATCCTCAAGCTGCTTGCCAGCAAAA 131315 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| | ||| || || | || | || ||||||||| ||||| || | | Sbjct 131316 ATAAGCCTCTGTTGATCAGGTGGAATGCCTTCTTTGTCCTGAATTTTAGCCTTCACATTA 131375 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | |||||| ||| ||| || || | |||||| | || || ||||||||||| Sbjct 131376 TCAATCGTATCAGAGCT---CTCAACTTCAAGCGTGATGGTCTTGCCGGTCAGCGTTTTG 131432 Query 39271 ACAAAGATTTGCATC 39285 ||||||||||||||| Sbjct 131433 ACAAAGATTTGCATC 131447 Score = 86.0 bits (94), Expect = 5e-12 Identities = 136/194 (70%), Gaps = 6/194 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || |||||||| ||||| || ||| |||| || |||||||| || ||||| Sbjct 131484 TCCTTCTGGATGTTATAATCAGCAAGAGTGCGTCCGTCCTCGAGCTGTTTCCCGGCAAAG 131543 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | ||||||||||| || | | ||||||||| ||||| |||| | Sbjct 131544 ATTAATCTCTGCTGGTCGGGTGGAATCCCCTCTTTGTCTTGAATTTTAGCCTTGACATTG 131603 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | ||||| ||| ||| || |||| ||||| | || || || || ||||| Sbjct 131604 TCAATTGTATCAGAGCT---CTCAACTTCCAGAGTGATGGTCTTCCCTGTAAGGGTTTTG 131660 Query 39271 ACAAAGATTTGCAT 39284 |||||||| ||||| Sbjct 131661 ACAAAGATCTGCAT 131674 >seq307481 Length=1856025 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | || | || | ||| || ||| || || || || || ||||||||| Sbjct 1819792 CCTCCTCTGAGACGGAGTACAAGATGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 1819851 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || |||||||| || |||||||| | | ||||||||||| || Sbjct 1819852 AGAGTGCGTCCGTCCTCGAGCTGTTTTCCGGCAAATATCAACCTCTGCTGGTCGGGTGGA 1819911 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| |||||| || | | | | |||||| ||| || Sbjct 1819912 ATACCCTCCTTGTCTTGGATTTTGGCCTTCACATTGTCAATAGTATCGGAGCTCTCAACT 1819971 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || ||||| ||||| |||||||| ||||| Sbjct 1819972 TCGAGCGTGATGGTCTTGCCAGTCAGAGTTTTGACAAAGATCTGCAT 1820018 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || ||||| || || |||||||| || ||| |||| || | ||| ||||| ||||| Sbjct 1820284 TCCTTCTGTATGTTGTAGTCGGCAAGAGTGCGTCCGTCCTCCAACTGCTTGCCAGCAAAG 1820343 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || |||||||||||||| | || | || |||||||||| ||| || || | | Sbjct 1820344 ATTAGACGCTGCTGGTCTGGAGGGATGCCCTCTTTGTCCTGGATCTTTGCCTTCACATTA 1820403 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | ||||| ||| |||||| || | ||||| | ||||| |||| || || Sbjct 1820404 TCGATGGTATCAGAGCT---CTCCACCTCAAGGGTGATGGTCTTTCCAGTCAATGTCTTT 1820460 Query 39271 ACAAAGATTTGCATCTT 39287 ||||| || ||||| || Sbjct 1820461 ACAAATATCTGCATATT 1820477 Score = 89.7 bits (98), Expect = 4e-13 Identities = 139/195 (71%), Gaps = 8/195 (4%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || || || ||||| || ||| | || || | ||| ||||| ||||| Sbjct 1820056 TCCTTCTGGATGTTGTAGTCCGCAAGAGTGCGTCCATCCTCCAACTGCTTGCCAGCAAAG 1820115 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 ||||| ||||||||||| | || | || ||||||||| ||| || || | | | | Sbjct 1820116 ATAAGGCGCTGCTGGTCTGGAGGGATGCCTTCTTTGTCCTGGATCTT-TGCCTTAACATT 1820174 Query 39214 G-CCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTT 39269 | | | ||| || ||| ||| || |||| || || | ||||| ||||| ||||| Sbjct 1820175 GTCAATCGTGTCAGAGCT---CTCAACTTCCAGAGTAATGGTCTTTCCAGTCAGGGTTTT 1820231 Query 39270 AACAAAGATTTGCAT 39284 ||||||||| ||||| Sbjct 1820232 AACAAAGATCTGCAT 1820246 >seq458253 Length=694718 Score = 95.1 bits (104), Expect = 1e-14 Identities = 162/233 (70%), Gaps = 4/233 (2%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || | | || | ||| || ||| || || || ||||| ||||| Sbjct 475459 CATGCCACCTCTCAACCTGAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAATC 475518 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| ||||| |||| || ||||| || || ||||| || |||||||| ||||| | Sbjct 475519 GGCAAGGGTTCGGCCGTCTTCGAGCTGCTTCCCAGCAAAGATCAGACGCTGTTGGTCAGG 475578 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATCGCTCGAC 39231 || | || ||| |||||| |||||| | || | |||| | || ||| | Sbjct 475579 TGGAATGCCCTCCTTGTCCTGGATTTTGGCCTTTACATTGTCG--ATGGTGTCGGAACTC 475636 Query 39232 TCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || |||| || || | || || || || ||||| |||||||| ||||| Sbjct 475637 TCGACTTCCAAAGTAATTGTCTTGCCAGTAAGTGTTTTGACAAAGATCTGCAT 475689 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || |||||||| || |||||||||||||| |||| || ||||| || || |||||| Sbjct 119704 TCCTTCTGTATATTGTAGTCGGCAAGTGTTCGGCCGTCTTCTAGCTGCTTTCCAGCAAAT 119763 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||| | ||| | || || ||||| ||| || || | | Sbjct 119764 ATCAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTG 119823 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | || || ||| ||| || || | ||||| | || || || || ||||| Sbjct 119824 TCAATGGTGTCAGAGCT---CTCGACCTCGAGAGTGATCGTCTTACCAGTGAGGGTTTTG 119880 Query 39271 ACAAAGATTTGCATCTT 39287 |||||||| |||||||| Sbjct 119881 ACAAAGATCTGCATCTT 119897 Score = 91.5 bits (100), Expect = 1e-13 Identities = 163/237 (69%), Gaps = 6/237 (3%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| || | | || | ||| || ||| || || || ||||| || || Sbjct 550893 CATGCCACCTCTCAACCTGAGGACAAGATGCAGGGTGGATTCCTTCTGGATATTGTAGTC 550952 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 |||||| ||||| |||| || ||||| || || ||||| || |||||||||||||| | Sbjct 550953 GGCAAGAGTTCGACCGTCTTCCAGCTGCTTTCCAGCAAAAATCAGACGCTGCTGGTCAGG 551012 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGA 39230 ||| | || || |||||| ||| || || | | | | || || ||| Sbjct 551013 GGGAATGCCTTCCTTGTCCTGGATCTTAGCCTTTACATTGTCAATGGTGTCAGAGCT--- 551069 Query 39231 CTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCTT 39287 ||| || || | ||||| | || || || || || ||||||||||| |||||||| Sbjct 551070 CTCGACCTCGAGAGTGATGGTCTTGCCGGTGAGGGTCTTAACAAAGATCTGCATCTT 551126 Score = 86.0 bits (94), Expect = 5e-12 Identities = 145/210 (69%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 39075 CACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATC 39134 |||||| ||||| || ||| || || || ||||||||||| || || ||| | || || Sbjct 549981 CACCAAGTGTAGAGTCGACTCCTTCTGAATGTTATAATCGGCCAGAGTACGTCCATCTTC 550040 Query 39135 AAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCAT 39194 ||||| || || ||||| || | | ||||||||| | || | || ||| |||||| Sbjct 550041 CAGCTGCTTACCAGCAAAAATCAACCTCTGCTGGTCAGGCGGGATGCCCTCCTTGTCCTG 550100 Query 39195 GATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTT 39254 ||| || ||| | | | | || || |||||| |||| || || |||| Sbjct 550101 GATCTTAGCTTTAACATTATCAATTGTGTCTGAACTCTCCACCTCCAATGTAATGGTTTT 550160 Query 39255 TCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || || || ||||| ||||| |||||||| Sbjct 550161 GCCAGTTAGGGTTTTCACAAATATTTGCAT 550190 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||||| || | || | ||| || || ||| || || ||||| || || ||| Sbjct 118984 CCACCTCTTAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCA 119043 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || |||||||| || ||||| || | |||||||||||| | ||| Sbjct 119044 AGAGTCCGGCCATCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGG 119103 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| |||||| ||| | | | | || || ||| ||| Sbjct 119104 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCT---CTCA 119160 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || || || ||||| |||||||| ||||| Sbjct 119161 ACTTCCAAAGTAATCGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 119210 Score = 82.4 bits (90), Expect = 6e-11 Identities = 135/192 (70%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || ||||| || |||||||| ||||| | || || ||||| || || ||||| Sbjct 475043 TCCTTCTGAATATTGTAGTCGGCAAGGGTTCGGCCATCTTCGAGCTGCTTTCCAGCAAAG 475102 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | |||||||||||||| ||| | || || |||||| |||||| || | ||| Sbjct 475103 ATCAAACGCTGCTGGTCGGGGGGAATGCCTTCCTTGTCCTGGATTTTAGCCTTTA-CGTT 475161 Query 39214 G-CCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAAC 39272 | | | ||||| ||| || || | || || | || || || || ||||| || Sbjct 475162 GTCAATAGTATCTGAACTCTCAACTTCTAAAGTAATTGTCTTGCCGGTAAGGGTTTTGAC 475221 Query 39273 AAAGATTTGCAT 39284 |||||| ||||| Sbjct 475222 AAAGATCTGCAT 475233 >seq1236130 Length=574753 Score = 91.5 bits (100), Expect = 1e-13 Identities = 139/197 (71%), Gaps = 6/197 (3%) Strand=Plus/Plus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || |||||||| || |||||||||||||| |||| || ||||| || || |||||| Sbjct 403107 TCCTTCTGTATATTGTAGTCGGCAAGTGTTCGGCCGTCTTCTAGCTGCTTTCCAGCAAAT 403166 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || ||||| |||||||| | ||| | || || ||||| ||| || || | | Sbjct 403167 ATCAGACGTTGCTGGTCAGGGGGGATGCCTTCCTTGTCTTGGATCTTAGCCTTTACATTG 403226 Query 39214 GCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTA 39270 | | || || ||| ||| || || | ||||| | || || || || ||||| Sbjct 403227 TCAATGGTGTCAGAGCT---CTCGACCTCGAGAGTGATCGTCTTACCAGTGAGGGTTTTG 403283 Query 39271 ACAAAGATTTGCATCTT 39287 |||||||| |||||||| Sbjct 403284 ACAAAGATCTGCATCTT 403300 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||||| || | || | ||| || || ||| || || ||||| || || ||| Sbjct 402387 CCACCTCTTAGACGCAGGACGAGATGCAGGGTTGACTCCTTCTGGATATTGTAGTCAGCA 402446 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || |||||||| || ||||| || | |||||||||||| | ||| Sbjct 402447 AGAGTCCGGCCATCTTCGAGCTGTTTTCCGGCAAAAATTAAACGCTGCTGGTCAGGGGGG 402506 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| |||||| ||| | | | | || || ||| ||| Sbjct 402507 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCT---CTCA 402563 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || || || ||||| |||||||| ||||| Sbjct 402564 ACTTCCAAAGTAATCGTCTTACCAGTGAGGGTTTTGACAAAGATCTGCAT 402613 >seq996803 Length=140400 Score = 91.5 bits (100), Expect = 1e-13 Identities = 145/207 (70%), Gaps = 6/207 (3%) Strand=Plus/Minus Query 39081 ATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTG 39140 |||||| ||| || || || ||||| || || || || ||||| | || |||||||| Sbjct 17060 ATGTAGGGTGGATTCCTTCTGGATATTGTAGTCAGCGAGGGTTCGACCATCTTCAAGCTG 17001 Query 39141 TTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTT 39200 || ||||| || || ||||||||||| |||| ||| | || || |||||| |||||| Sbjct 17000 CTTTCCCGCGAAAATTAGACGCTGCTGATCGGGGGGAATGCCTTCCTTGTCCTGGATTTT 16941 Query 39201 CTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCCACGTCCACCGTGATACTTTTTCC 39257 || | | | | ||||| ||| || || |||| || || | || || Sbjct 16940 GGCCTTCACATTGTCGATGGTATCTGAGCT---TTCTACTTCCAAAGTAATTGTCTTACC 16884 Query 39258 CGTCAGCGTTTTAACAAAGATTTGCAT 39284 || ||||||||||||||||| ||||| Sbjct 16883 TGTGAGCGTTTTAACAAAGATCTGCAT 16857 Score = 86.0 bits (94), Expect = 5e-12 Identities = 160/232 (69%), Gaps = 10/232 (4%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||| || || | || | ||||| || || || || ||||| || || ||| Sbjct 16855 CCACCTCTCAATCGGAGGACGAGGTGTAGGGTCGATTCCTTCTGAATATTGTAGTCAGCA 16796 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 |||||||| | || |||||||| || || ||||| || |||||||||||||| | ||| Sbjct 16795 AGTGTTCGGCCATCTTCAAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGGTCCGGGGGA 16736 Query 39178 ACGCTCTCTTTGTCCATGATTTT--CTGTTTGAGCGTCGCCACCGTATC---GCTCGACT 39232 | || || |||||| ||| || | || | |||| | || || ||| || Sbjct 16735 ATGCCTTCCTTGTCCTGGATCTTGGCCTTTACATTGTCG--ATGGTGTCCGAGCT---CT 16681 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 | || || | || || |||| || || || ||||||||||| || ||||| Sbjct 16680 CAACTTCTAAAGTAATCGTTTTACCAGTGAGGGTTTTAACAAAAATCTGCAT 16629 >seq810261 Length=116169 Score = 89.7 bits (98), Expect = 4e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||| || | || || ||| || || || ||||| ||||||||| Sbjct 97539 CCTCCTCTGAGACGTAGGACGAGGTGAAGAGTGGATTCCTTCTGGATATTGTAATCGGCA 97480 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || |||||||| || ||||| || | | ||||||||||| || Sbjct 97479 AGAGTGCGTCCGTCCTCGAGCTGTTTTCCGGCAAAGATCAACCTCTGCTGGTCGGGTGGA 97420 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| ||||| || | | | | |||||| ||| || Sbjct 97419 ATACCCTCCTTGTCTTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAGTTCTCAACT 97360 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || ||||| ||||| || ||||| ||||| Sbjct 97359 TCGAGCGTGATGGTCTTGCCAGTCAGGGTTTTGACGAAGATCTGCAT 97313 >seq679059 Length=136279 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || ||||||||||| || ||| | || || || ||||| || ||||| Sbjct 54687 TCCTTCTGAATGTTGTAATCGGCAAGAGTGCGTCCATCCTCGAGTTGTTTTCCGGCAAAG 54628 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | |||||| ||||| || | | ||||||||| ||||| ||||| || Sbjct 54627 ATCAACCTCTGCTGATCGGTTGGAATCCCCTCTTTGTCTTGAATTTTAGCTTTGACATTC 54568 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| ||| || |||| ||||| | || || || || ||||| ||| Sbjct 54567 TCAATTGTATCGGAGCTCTCAACTTCCAGAGTGATGGTCTTGCCAGTAAGGGTTTTGACA 54508 Query 39274 AAGATTTGCATC 39285 ||||| |||||| Sbjct 54507 AAGATCTGCATC 54496 Score = 89.7 bits (98), Expect = 4e-13 Identities = 135/192 (70%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 39094 TCTTTTTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAAT 39153 || || || || || ||||||||||| || ||| | || || || ||||| || ||||| Sbjct 120243 TCCTTCTGAATGTTGTAATCGGCAAGAGTGCGTCCATCCTCGAGTTGTTTTCCGGCAAAG 120184 Query 39154 ATAAGACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTC 39213 || | | |||||| ||||| || | | ||||||||| ||||| ||||| || Sbjct 120183 ATCAACCTCTGCTGATCGGTTGGAATCCCCTCTTTGTCTTGAATTTTAGCTTTGACATTC 120124 Query 39214 GCCACCGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACA 39273 | | |||||| ||| || |||| ||||| | || || || || ||||| ||| Sbjct 120123 TCAATTGTATCGGAGCTCTCAACTTCCAGAGTGATGGTCTTGCCAGTAAGGGTTTTGACA 120064 Query 39274 AAGATTTGCATC 39285 ||||| |||||| Sbjct 120063 AAGATCTGCATC 120052 >seq1197656 Length=450275 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 |||||||| | |||| || | || || ||| || || || || || ||||||||| Sbjct 440526 CCTCCTCTGAGACGTAGGACGAGGTGAAGAGTGGATTCCTTCTGGATGTTGTAATCGGCA 440467 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || ||| |||| || |||||||| | ||||| || | | ||||||||||| || Sbjct 440466 AGAGTGCGTCCGTCCTCGAGCTGTTTTCTGGCAAAGATCAACCTCTGCTGGTCGGGTGGA 440407 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATCGCTCGACTCCACG 39237 | | ||| ||||| ||||| || | | | | |||||| ||| || Sbjct 440406 ATACCCTCCTTGTCTTGAATTTTGGCCTTCACATTGTCAATAGTATCGGAGTTCTCAACT 440347 Query 39238 TCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || | |||||| | || || ||||| ||||| |||||||| ||||| Sbjct 440346 TCGAGCGTGATGGTCTTGCCAGTCAGGGTTTTGACAAAGATCTGCAT 440300 >seq753218 Length=1074133 Score = 86.0 bits (94), Expect = 5e-12 Identities = 167/246 (68%), Gaps = 2/246 (1%) Strand=Plus/Plus Query 39039 TAACTAAAATTTATTCAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTT 39098 |||| ||||||| || ||| ||||| | ||| | || | || || || || || Sbjct 399784 TAACAAAAATTTG--CATGCCACCTCTCAGGCGGAGAACTAGGTGCAGGGTTGATTCCTT 399841 Query 39099 TTGTATATTATAATCGGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAG 39158 || ||||| || |||||||||||||| | || || || || || || ||||| ||||| Sbjct 399842 CTGGATATTGTAGTCGGCAAGTGTTCGACCATCTTCGAGTTGCTTTCCTGCAAAGATAAG 399901 Query 39159 ACGCTGCTGGTCGGTGGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCAC 39218 |||||||||||| | ||| | | || |||||| ||| || || | | | | Sbjct 399902 ACGCTGCTGGTCAGGGGGTATACCTTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAAT 399961 Query 39219 CGTATCGCTCGACTCCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGAT 39278 ||||| ||| || |||| || || | || || || || ||||| |||||||| Sbjct 399962 AGTATCTGAACTCTCAACTTCCAAAGTTATTGTCTTGCCGGTGAGAGTTTTGACAAAGAT 400021 Query 39279 TTGCAT 39284 ||||| Sbjct 400022 CTGCAT 400027 >seq277093 Length=401374 Score = 86.0 bits (94), Expect = 5e-12 Identities = 161/234 (69%), Gaps = 2/234 (1%) Strand=Plus/Plus Query 39054 CAAGCCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATC 39113 || ||| ||||| | || | || | ||||| ||| || ||||| || || || || Sbjct 150479 CACGCCACCTCTCAGACGGAGAACGAGGTGTAGGGTGGATTCCTTTTGGATGTTGTAGTC 150538 Query 39114 GGCAAGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGT 39173 ||||||||||| | || || ||||| || || ||||| || ||||||||||| || | Sbjct 150539 CGCAAGTGTTCGGCCATCTTCCAGCTGCTTTCCAGCAAAGATCAGACGCTGCTGATCAGG 150598 Query 39174 GGGCACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC-GCTCGACT 39232 || | | || |||||| ||| || ||||| || | | || || | | | | Sbjct 150599 AGGAATCCCTTCCTTGTCCTGGATCTTGGCTTTGACATTCTCAATGGTGTCAGAACTA-T 150657 Query 39233 CCACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCATCT 39286 | || |||| ||||| | || || || || ||||| |||||||| ||||||| Sbjct 150658 CGACCTCCAGAGTGATGGTCTTGCCAGTGAGAGTTTTGACAAAGATCTGCATCT 150711 Score = 82.4 bits (90), Expect = 6e-11 Identities = 157/230 (68%), Gaps = 6/230 (3%) Strand=Plus/Plus Query 39058 CCTCCTCTTAAGCGTAACACCAAATGTAGCGTGCTCTCTTTTTGTATATTATAATCGGCA 39117 || ||||||| || | || | ||| || || ||| || || ||||| || || ||| Sbjct 296713 CCACCTCTTAGACGCAGGACGAGATGCAGGGTCGACTCCTTCTGGATATTGTAGTCAGCA 296772 Query 39118 AGTGTTCGTTCGTCATCAAGCTGTTTGCCCGCAAATATAAGACGCTGCTGGTCGGTGGGC 39177 || || || | || || |||||||| || |||||||| | |||||||||||| | || Sbjct 296773 AGGGTCCGGCCATCTTCGAGCTGTTTCCCGGCAAATATTAAACGCTGCTGGTCAGGAGGG 296832 Query 39178 ACGCTCTCTTTGTCCATGATTTTCTGTTTGAGCGTCGCCACCGTATC---GCTCGACTCC 39234 | || || |||||| |||||| ||| | | | | || || ||| ||| Sbjct 296833 ATGCCTTCCTTGTCCTGGATTTTGGCTTTCACATTGTCAATGGTGTCCGAGCT---CTCA 296889 Query 39235 ACGTCCACCGTGATACTTTTTCCCGTCAGCGTTTTAACAAAGATTTGCAT 39284 || |||| || || | || || || || ||||| |||||||| ||||| Sbjct 296890 ACTTCCAAAGTAATCGTCTTACCAGTGAGAGTTTTGACAAAGATCTGCAT 296939 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 423071551135145