Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_030240.1 Length=128058 Score E Sequences producing significant alignments: (Bits) Value seq894858 102 7e-17 seq304998 102 7e-17 seq1192815 95.1 1e-14 seq878211 89.7 4e-13 seq255744 86.0 5e-12 seq434543 84.2 2e-11 >seq894858 Length=235 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 ||||||||| || | | ||| | ||| || |||||||| || ||||| |||||||| | Sbjct 190 TGCCGCCTCTCAGACGAAGCACAAGGTGTAAGGTTGATTCCTTCTGAATGTTGTAATCAG 131 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | ||| ||||| || || || ||| ||||||||||||| |||||| || Sbjct 130 CCAATGTTCGGCCATCCTCCAACTGCTTACCGGCAAATATAAGCCTTTGCTGGTCTGGGG 71 Query 101130 GCACGCCTTCTTTGTC 101145 | | |||||| ||||| Sbjct 70 GAATGCCTTCCTTGTC 55 >seq304998 Length=937332 Score = 102 bits (112), Expect = 7e-17 Identities = 104/136 (76%), Gaps = 0/136 (0%) Strand=Plus/Minus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 ||||||||| || | | ||| | ||| || |||||||| || ||||| |||||||| | Sbjct 915457 TGCCGCCTCTCAGACGAAGCACAAGGTGTAAGGTTGATTCCTTCTGAATGTTGTAATCAG 915398 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| ||| | ||| ||||| || || || ||| ||||||||||||| |||||| || Sbjct 915397 CCAATGTTCGGCCATCCTCCAACTGCTTCCCGGCAAATATAAGCCTTTGCTGGTCTGGGG 915338 Query 101130 GCACGCCTTCTTTGTC 101145 | | |||||| ||||| Sbjct 915337 GAATGCCTTCCTTGTC 915322 Score = 89.7 bits (98), Expect = 4e-13 Identities = 90/117 (77%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 101029 CACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTC 101088 ||| | ||| || || ||||| || ||||| |||||||| |||| ||| | ||| || Sbjct 806599 CACAAGGTGTAAGGTCGATTCCTTCTGAATGTTGTAATCAGCCAATGTTCGGCCATCCTC 806540 Query 101089 CAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTC 101145 ||| || || || ||| |||| ||||||||||||||| ||| | |||||| ||||| Sbjct 806539 CAACTGCTTACCGGCAAATATGAGCCTTTGTTGGTCTGGGGGAATGCCTTCCTTGTC 806483 >seq1192815 Length=22216 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| || |||| ||| | ||| ||||| ||||| || ||||| |||| | Sbjct 10110 CCACCTCTCAATCTCAAGACCAAGTGTAGAGTAGATTCCTTTTGGATGTTGTAGTCGGAC 10051 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | |||| | |||||||||||| || || ||| | || | ||||||||||| || Sbjct 10050 AAAGTTCTACCATCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGA 9991 Query 101132 ACGCCTTCTTTGTCGGCAATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTT 101191 | ||||| ||||| || || || |||| | | | || || | || | Sbjct 9990 ATACCTTCCTTGTCTTGGATCTTGGACTTGACATTGTCAATAGTGTCAGAAGATTCAACT 9931 Query 101192 TCGACGGTAATAGTTTTGCCCGTCAATGTTTTAATAAAAATTTGCAT 101238 || | ||||||||| || || || || || || | ||||||||||| Sbjct 9930 TCCAGGGTAATAGTCTTACCGGTTAAAGTCTTGACGAAAATTTGCAT 9884 >seq878211 Length=3116 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 101012 CCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCC 101071 || |||| |||||| || || | ||||||||| |||||||||||||| ||||| || | | Sbjct 1304 CCACCTCTCAATCTCAAGACTAAGTGCAAAGTGGATTCTTTTTGAATGTTGTAGTCAGAC 1245 Query 101072 ATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGC 101131 | ||| | ||||||||||| || || ||| | || | ||||||||||| || Sbjct 1244 AAGGTTCTACCGTCTTCCAATTGCTTACCAGCAAAGATCAATCTTTGTTGGTCAGGTGGG 1185 Query 101132 ACGCCTTCTTTGTC 101145 | ||||| ||||| Sbjct 1184 ATACCTTCCTTGTC 1171 >seq255744 Length=371538 Score = 86.0 bits (94), Expect = 5e-12 Identities = 133/190 (70%), Gaps = 0/190 (0%) Strand=Plus/Minus Query 101030 ACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGGCCATAGTTTTGGAATCTTCC 101089 |||| ||| | ||||| ||||| |||||||||||||| |||| |||| | ||||||| Sbjct 138849 ACCAGGTGTAGGGTTGACTCTTTCTGAATATTGTAATCAGCCAGAGTTCTCCCATCTTCC 138790 Query 101090 AATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGGGCACGCCTTCTTTGTCGGCA 101149 || |||||||| ||| |||| | | ||| ||||| || | || || || || | Sbjct 138789 AACTGTTTGCCAGCAAATATTAAACGTTGCTGGTCAGGAGGAATACCCTCCTTATCTTGA 138730 Query 101150 ATTTTTTGTTTCACATCGGCCACCGTCTCTGTGGACGTTGTTTCGACGGTAATAGTTTTG 101209 || || ||||||| | | | || |||| ||| | || | ||||||||| || Sbjct 138729 ATCTTAGCCTTCACATTGTCAATTGTATCTGAAGACTCTACCTCAAGGGTAATAGTCTTA 138670 Query 101210 CCCGTCAATG 101219 || |||| || Sbjct 138669 CCAGTCACTG 138660 >seq434543 Length=395133 Score = 84.2 bits (92), Expect = 2e-11 Identities = 100/136 (74%), Gaps = 0/136 (0%) Strand=Plus/Plus Query 101010 TGCCGCCTCGCAATCTTAACACCATGTGCAAAGTTGATTCTTTTTGAATATTGTAATCGG 101069 |||| |||| || | | ||| | ||||| |||||||| || |||||||||||||| | Sbjct 121575 TGCCACCTCTCAGACGGAGCACAAGGTGCAGGGTTGATTCCTTCTGAATATTGTAATCAG 121634 Query 101070 CCATAGTTTTGGAATCTTCCAATTGTTTGCCCGCATATATAAGCCTTTGTTGGTCTACGG 101129 ||| || || ||| |||| || ||||| ||| | ||||| || |||||||| || Sbjct 121635 CCAAGGTCCTGCCATCCTCCAGCTGCTTGCCGGCAAAGATAAGTCTCTGTTGGTCGGGGG 121694 Query 101130 GCACGCCTTCTTTGTC 101145 | | ||||| ||||| Sbjct 121695 GTATACCTTCCTTGTC 121710 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 403486451951235