Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_031040.1 Length=31987 Score E Sequences producing significant alignments: (Bits) Value seq927542 315 1e-81 >seq927542 Length=455 Score = 315 bits (348), Expect = 1e-81 Identities = 201/219 (92%), Gaps = 0/219 (0%) Strand=Plus/Minus Query 11971 GATATTAACGCACATAAACTTGCTGAAAATGGGGACTCTGTGAGAACATCAGCATATTGG 12030 ||||| ||||||||||||||||||||||||||| ||||||||||||| |||||| ||||| Sbjct 453 GATATCAACGCACATAAACTTGCTGAAAATGGGAACTCTGTGAGAACGTCAGCACATTGG 394 Query 12031 AAATCAGTAGGAAATGCAGAGTTTTACATTAAAGAGATCTACCAAAAGTTGAGCGCTTTA 12090 |||||||||||||||||||||||||| ||||||||||| ||||||||||| |||| || Sbjct 393 AAATCAGTAGGAAATGCAGAGTTTTATATTAAAGAGATGTACCAAAAGTTAGACGCTCTA 334 Query 12091 GCAGAAATTGATAGACTTTTTCATTGGTCCGATCGTTTACATCAAGAACAATTAAAATTT 12150 ||||||||||||||||| || |||||||| ||||||||||||||||||||| |||||| Sbjct 333 GCAGAAATTGATAGACTATTCCATTGGTCAAGTCGTTTACATCAAGAACAATTGAAATTT 274 Query 12151 GTTAGTAAATATCCAAAAGTTATGGAAAAATACCGACAA 12189 |||||||||||||| |||||||||||||||||| ||||| Sbjct 273 GTTAGTAAATATCCCAAAGTTATGGAAAAATACAGACAA 235 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 100735412016770