Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_031062.1 Length=75147 Score E Sequences producing significant alignments: (Bits) Value seq308694 96.9 2e-15 >seq308694 Length=301 Score = 96.9 bits (106), Expect = 2e-15 Identities = 180/262 (69%), Gaps = 2/262 (1%) Strand=Plus/Plus Query 72268 GTTAAAGCCCCACACAAAGATAACCGAGTAGTCGGCTGTCTGTTTGGCTGAGGTGGCAAA 72327 |||| || |||| || |||| || ||| |||| ||| |||| ||| || || ||||| Sbjct 5 GTTATAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAA 64 Query 72328 GTCAGTGGTGATATAGAAGTTGAATGTCTGCTGATTCTCGATTAACAGTGACC-GGTCAT 72386 |||||||||||| |||||||| ||| | || |||| | || || || | | Sbjct 65 GTCAGTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCA-GAATAGAATCCAACTTAA 123 Query 72387 ACCAACGCATATCCGAATCCTGAACCAGACGTTCTTCTTCAGAGGTAATGCGCAGCATCA 72446 |||||| ||||| ||| |||| || || ||||||||||| | || || ||||| | Sbjct 124 ACCAACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTA 183 Query 72447 GCTCTTGCATGAAGCCAGATACCTTACCTGTCTTGACTGCCATTTCCCACTGAGCTTCGA 72506 |||| || ||||| | || ||| |||| | ||| | || ||| | | || Sbjct 184 GCTCCTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGA 243 Query 72507 TGTACTCATAAGGGAAACGGTC 72528 ||||||||| | |||||| || Sbjct 244 CGTACTCATACGTGAAACGATC 265 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 236723146042020