Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_031104.1 Length=72979 Score E Sequences producing significant alignments: (Bits) Value seq1028318 100 1e-16 seq308694 98.7 5e-16 >seq1028318 Length=438 Score = 100 bits (110), Expect = 1e-16 Identities = 190/277 (69%), Gaps = 7/277 (3%) Strand=Plus/Minus Query 39898 TCATGACGCAAGTGAACGACCATCTGGTCTTGGTTTCCGGTCTGTCCGCTACCGGCAAGT 39957 ||||| | ||| || ||||||||||| ||| | || ||| ||||| ||||| | Sbjct 318 TCATGTCTCAAACCAATGACCATCTGGTATTGCTCGTAGGCAAGTCTGCTACTGGCAAAT 259 Query 39958 CTGCCTGTCTGCGGAATCTCCGGGAGCCGGAGAAGG--TCATCTACCTGAACTGCGAAGC 40015 | || | ||| | || || | |||| |||||| | || || |||||||| || Sbjct 258 CAGCATCTCTCCTTAACCTTGAGAAGCC--AGAAGGAGTGATGTATCTGAACTGTGAGAA 201 Query 40016 CGGTAAGAGGCTGCCGTTCAAATCCCGCTTCATCGAGCGGACGGTGACCGATCCCTACCA 40075 ||| |||| |||| |||||| | ||||| || |||||| ||||||||||| || Sbjct 200 CGGCAAGAAATTGCCTTTCAAAAGCAAGTTCATGCAGTTGACGGTTACCGATCCCTATCA 141 Query 40076 GATCCCCACCGTCTTCGACGCAGTGGTGGAAGGGAAGGTAGAGGCCCACACCATCATCAT 40135 | | | |||| | ||||| ||| ||| |||| ||| |||||| |||| Sbjct 140 GCTTTTTGAAGCCTTCCA---AGTGGCTGAATCAAAGCCAGAGATCCATACCATCGTCAT 84 Query 40136 CGACACCCTCACCTATCTGCTGGACATGTACGAGTCC 40172 ||||| || |||||||| ||||| |||| |||||| Sbjct 83 CGACAGTCTGACCTATCTTCTGGATATGTTTGAGTCC 47 >seq308694 Length=301 Score = 98.7 bits (108), Expect = 5e-16 Identities = 193/283 (68%), Gaps = 2/283 (1%) Strand=Plus/Plus Query 68074 TAGGCCCAGACACTGATGATGCTGAAGTCACTGGCCTTCTTCGCAGAGGTAGCGAAGTCA 68133 ||||||||||| ||||| ||||||| || ||| ||| ||||| |||||| Sbjct 9 TAGGCCCAGACTGAGATGACAGAGAAGTCAGCTTTCTGCTTGATAGAAGTAGCAAAGTCA 68 Query 68134 GTAGTGACGTAGAAGTTGTACCGCTTCTTGTTGTCCAGCA-CGTTGCGACGCATGTACCA 68192 || |||| ||||||||| | || | |||||| | ||| | | | | | | |||| Sbjct 69 GTGGTGATGTAGAAGTTAAATCGTTCCTTGTTCTTCAGAATAGAATCCA-ACTTAAACCA 127 Query 68193 AGCCACCTCACCATCCTGGATGAGACGGTCTTCGTCGGACATGATCTGGAGCATAAGCTC 68252 | | | |||||||| || || | || ||||| || |||||||| | ||||| ||||| Sbjct 128 ACCAATATCACCATCTTGAATCATGCGATCTTCTTCAGACATGATTCGTAGCATTAGCTC 187 Query 68253 TTGGTTGAACGTCTCGATCTTCCCTGCCTTCTTGGCCAGGGTGTACTTCTGCAACACGAA 68312 |||||||| || || | || |||| ||||| | |||| | | ||| | Sbjct 188 CTGGTTGAAGGTATCCACACGACCACTCTTCATGGCCTTGTCATACTCATCCCTGACGTA 247 Query 68313 GTCGTAGGTGAATCGGTCAGCCCATGCACCCCTGAACTCTTCC 68355 || || ||||| || |||| ||| | ||| ||||| |||||| Sbjct 248 CTCATACGTGAAACGATCAGGCCAGGAACCTCTGAAGTCTTCC 290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 229890108541100