Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pseudotsuga_20menziesii_20[genbank_20GCA_5F001517045.1_202015-12-22] 1,236,665 sequences; 14,673,225,455 total letters Query= NC_031761.1 Length=131855 Score E Sequences producing significant alignments: (Bits) Value seq842679 116 3e-21 seq1192815 109 5e-19 seq265356 98.7 8e-16 seq1122789 96.9 3e-15 seq679059 96.9 3e-15 seq485728 96.9 3e-15 seq913050 95.1 1e-14 seq172461 91.5 1e-13 seq1197656 89.7 4e-13 seq810261 86.0 5e-12 seq929835 84.2 2e-11 >seq842679 Length=263869 Score = 116 bits (128), Expect = 3e-21 Identities = 162/227 (71%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 |||||||| |||||||||||| |||||||||| ||||| || | ||| || | Sbjct 131446 ATGCAAATCTTTGTCAAAACGCTGACCGGCAAGACCATCACGCTTGAAGTTGAGAGCTCT 131387 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| |||||||||||| |||| |||||| Sbjct 131386 GATACGATTGATAATGTGAAGGCTAAAATTCAGGACAAAGAAGGCATTCCACCTGATCAA 131327 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || |||||||||| ||| ||||| || | || ||| | ||| | || ||||| || Sbjct 131326 CAGAGGCTTATTTTTGCTGGCAAGCAGCTTGAGGATGGTCGAACACTTGCTGATTACAAC 131267 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| || || | || |||||| |||| ||||| Sbjct 131266 ATTCAGAAGGAATCTACCCTCCACCTTGTCTTGCGTTTGCGTGGTGG 131220 Score = 86.0 bits (94), Expect = 5e-12 Identities = 154/225 (68%), Gaps = 0/225 (0%) Strand=Plus/Minus Query 111093 TTTAAAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGA 111152 ||| || ||||| || ||||| || ||||||||||| || ||||| || | || ||| Sbjct 132593 TTTTAAGATGCAGATATTTGTGAAGACGTTGACCGGAAAGACCATCACTCTTGAGGTGGA 132534 Query 111153 ACCCAGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGT 111212 | ||| | ||| | | || || || ||| |||||||| || ||||| Sbjct 132533 GAGCTCAGATACCATTGACAACGTTAAGTCGAAGATTCAGGACAAAGAGGGAATTCCCCC 132474 Query 111213 CGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGA 111272 |||||||| ||||| || | ||| ||||| || ||||||| |||| | || || Sbjct 132473 TGATCAACAGAGGCTCATATTTGCCGGCAAGCAGCTGGAAGACGGCCGAACTCTCGCTGA 132414 Query 111273 TTATAATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCT 111317 ||| ||||| || || ||||| || || || | ||| | ||||| Sbjct 132413 TTACAATATTCAGAAGGAATCCACTCTTCACCTCGTGCTCCGTCT 132369 >seq1192815 Length=22216 Score = 109 bits (120), Expect = 5e-19 Identities = 162/230 (70%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 111097 AAAATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCC 111156 || ||||||||||| ||||| || || ||||| || || |||||| ||||| ||| | Sbjct 9881 AAGATGCAAATTTTCGTCAAGACTTTAACCGGTAAGACTATTACCCTGGAAGTTGAATCT 9940 Query 111157 AGCGATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGAT 111216 || || ||| | | || || || || ||||| ||||| |||| || Sbjct 9941 TCTGACACTATTGACAATGTCAAGTCCAAGATCCAAGACAAGGAAGGTATTCCACCTGAC 10000 Query 111217 CAACAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTAT 111276 |||||||| | || | ||| || || |||||||||||| || |||| || |||| || Sbjct 10001 CAACAAAGATTGATCTTTGCTGGTAAGCAATTGGAAGATGGTAGAACTTTGTCCGACTAC 10060 Query 111277 AATATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || ||||| |||||||| ||||| || || ||| | || | ||||| Sbjct 10061 AACATCCAAAAGGAATCTACTCTACACTTGGTCTTGAGATTGAGAGGTGG 10110 >seq265356 Length=295507 Score = 98.7 bits (108), Expect = 8e-16 Identities = 158/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| ||||| ||||| || |||| || | Sbjct 165474 ATGCAGATATTTGTGAAGACGTTGACAGGCAAGACCATCACACTGGAGGTTGAGAGCTCT 165533 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | | | | |||||| || ||| ||||| ||||| |||| ||||| Sbjct 165534 GATACGATCGATAATGTAAAAGCGAAGATTCAGGACAAGGAAGGAATTCCTCCTGATCAG 165593 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||| | || | ||| |||||||| |||| ||| |||| | |||||||| || Sbjct 165594 CAGAGGTTGATCTTTGCTGGCAAACAGCTGGAGGATGGGCGAACTCTCGCCGATTACAAC 165653 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || || |||||||| ||| | || ||||||||||| ||||| Sbjct 165654 ATCCAGAAGGAGTCTACACTTCATCTCGTCTTGCGTCTGCGTGGTGG 165700 >seq1122789 Length=489025 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| |||||||||||| |||| ||||| ||||||||||||| || ||||| Sbjct 336431 AAAATTCAAGACAAAGAAGGCATTCCTCCTGATCAGCAAAGGCTTATTTTTGTTGGCAAG 336372 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 336371 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 336312 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||| ||| ||||| Sbjct 336311 CTTGTCTTGCGTCGGCGTGGTGG 336289 >seq679059 Length=136279 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| |||||||||||| ||| ||||| ||||||||||||| ||| ||||| Sbjct 120648 AAAATTCAGGACAAAGAAGGCATTCTTCCTGATCAGCAAAGGCTTATTTTTGCTGGCAAG 120707 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 120708 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 120767 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || |||||| |||| ||||| Sbjct 120768 CTTGTCTTGCGTTTGCGTGGTGG 120790 >seq485728 Length=372489 Score = 96.9 bits (106), Expect = 3e-15 Identities = 107/143 (75%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| |||||||||||| |||| | |||| ||||||||||||| ||| ||||| Sbjct 86668 AAAATTCAGGACAAAGAAGGCATTCCTGCTCATCAGCAAAGGCTTATTTTTGCTGGCAAG 86609 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 86608 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 86549 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||| || ||||| Sbjct 86548 CTTGTCTTGCGTCGCCGTGGTGG 86526 >seq913050 Length=592780 Score = 95.1 bits (104), Expect = 1e-14 Identities = 157/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || |||||||| || || || || || |||| || | Sbjct 269798 ATGCAGATATTTGTTAAGACGTTGACGGGTAAGACGATCACACTGGAGGTTGAGAGCTCT 269857 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || |||||| | ||||||||||| |||| | |||||| Sbjct 269858 GATACGATTGATAATGTGAAGGCTAAAATTCACTACAAAGAAGGCATTCCTCTTGATCAA 269917 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 |||||| |||||| ||| ||||| || |||| ||| ||| | || ||||| || Sbjct 269918 CAAAGGTTTATTTTTGCTGGCAAGCAGCTGGAGGATGACCGAACACTTGCTGATTACAAC 269977 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || || || |||||||| | || | || ||||||| ||| ||||| Sbjct 269978 ATCCAGAAGGAATCTACCATCCACCTTGTCTTGCGTCGGCGTGGTGG 270024 Score = 87.8 bits (96), Expect = 1e-12 Identities = 105/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| | ||||||||||| |||| | ||||||||||||||||||| ||| ||||| Sbjct 181766 AAAATTCACTACAAAGAAGGCATTCCTCTTGATCAACAAAGGCTTATTTTTGCTGGCAAG 181825 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || || ||| ||| | || ||||| || || || || |||||||| | || Sbjct 181826 CAGCATGAGGATGGCCGAACACTTGCTGATTACAACATCCAGAAGGAATCTACCATCCAC 181885 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||| ||| ||||| Sbjct 181886 CTTGTCTTGCGTCGGCGTGGTGG 181908 >seq172461 Length=351322 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| ||||||||||| |||| ||||| ||||||||||||| ||| ||||| Sbjct 152502 AAAATTCAGGACAAAGAAGGGATTCCTCCTGATCAGCAAAGGCTTATTTTTGCTGGCAAG 152443 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 152442 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 152383 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || |||| || ||| ||||| Sbjct 152382 CTTGTCTTGCCTCGGCGTGGTGG 152360 Score = 91.5 bits (100), Expect = 1e-13 Identities = 106/143 (74%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| ||||||||||| |||| ||||| ||||||||||||| || ||||| Sbjct 276536 AAAATTCAGGACAAAGAAGGGATTCCTCCTGATCAGCAAAGGCTTATTTTTGGTGGCAAG 276477 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| | |||| | || ||||| || || || || |||||||| || || Sbjct 276476 CAGCTGGAGGATGGTCGAACTCTTGCTGATTACAACATTCAGAAGGAATCTACCCTCCAC 276417 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || ||||||| ||| ||||| Sbjct 276416 CTTGTCTTGCGTCGGCGTGGTGG 276394 Score = 82.4 bits (90), Expect = 6e-11 Identities = 104/143 (73%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 111184 AAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAA 111243 |||||| |||||||||||| |||| |||| ||||||||||||| ||| ||||| Sbjct 35672 AAAATTCAAGACAAAGAAGGCATTCCTCCTAATCAGCAAAGGCTTATTTTTGCTGGCAAG 35613 Query 111244 CAATTGGAAGATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACAT 111303 || |||| ||| ||| |||| ||||| || || || || |||||||| | || Sbjct 35612 CAGCTGGAGGATGGCCGAACACTGGCTGATTACAACATTCAGAAGGAATCTACCATCCAC 35553 Query 111304 TTAGTGTTGCGTCTGCGCGGTGG 111326 | || |||||| ||| ||||| Sbjct 35552 CTTGTCTTGCGTTGGCGTGGTGG 35530 >seq1197656 Length=450275 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| ||||| ||||| ||||| || ||||| |||| || ||||| || ||||| Sbjct 441077 GACAAGGAAGGAATTCCCCCTGATCAGCAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAA 441136 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| | ||| | || ||||| ||||| ||||| ||||| || || || | || ||| Sbjct 441137 GATGGGAGAACCCTAGCTGATTACAATATTCAAAAGGAATCCACCCTCCACCTTGTTTTG 441196 Query 111313 CGTCTGCGCGGTGG 111326 |||||||| ||||| Sbjct 441197 CGTCTGCGTGGTGG 441210 >seq810261 Length=116169 Score = 86.0 bits (94), Expect = 5e-12 Identities = 155/227 (68%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 111100 ATGCAAATTTTTGTCAAAACGTTGACCGGCAAAACCATTACCGTGGAAACGGAACCCAGC 111159 ||||| || ||||| || || ||||| ||||| || || || |||| || | Sbjct 97997 ATGCAGATATTTGTGAAGACTTTGACGGGCAAGACAATCACACTGGAGGTTGAGAACTCT 98056 Query 111160 GATTCTGTTGGCCAGGTAAAACAAAAAATTGCCGACAAAGAAGGCGTTCCCGTCGATCAA 111219 ||| | ||| | || || || ||| ||||| ||||| ||||| ||||| Sbjct 98057 GATACGATTGATAACGTGAAGGCTAAGATTCAGGACAAGGAAGGAATTCCCCCTGATCAG 98116 Query 111220 CAAAGGCTTATTTATGCGGGCAAACAATTGGAAGATTCTAAAACTATGGCCGATTATAAT 111279 || ||||| |||| || ||||| || |||||||| ||| | || ||||| ||| Sbjct 98117 CAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAAGATGGGCGAACCCTAGCTGATTACAAT 98176 Query 111280 ATACAAAAAGAATCTACACTACATTTAGTGTTGCGTCTGCGCGGTGG 111326 || ||||| ||||| || || || | || ||||||||||| ||||| Sbjct 98177 ATTCAAAAGGAATCCACCCTCCACCTTGTTTTGCGTCTGCGTGGTGG 98223 >seq929835 Length=122901 Score = 84.2 bits (92), Expect = 2e-11 Identities = 99/134 (74%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 111193 GACAAAGAAGGCGTTCCCGTCGATCAACAAAGGCTTATTTATGCGGGCAAACAATTGGAA 111252 ||||| ||||| ||||| |||||||| ||||| |||| || ||||| || ||||| Sbjct 5315 GACAAGGAAGGAATTCCCCCTGATCAACAGAGGCTCATTTTCGCAGGCAAGCAGCTGGAA 5256 Query 111253 GATTCTAAAACTATGGCCGATTATAATATACAAAAAGAATCTACACTACATTTAGTGTTG 111312 ||| ||| | || ||||| ||||| ||||| ||||| || || || | | ||| Sbjct 5255 GATGGGCGAACCCTAGCTGATTACAATATTCAAAAGGAATCCACCCTCCACCTTATTTTG 5196 Query 111313 CGTCTGCGCGGTGG 111326 |||||||| ||||| Sbjct 5195 CGTCTGCGTGGTGG 5182 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 415453722888040