Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_001132.2 Length=161773 Score E Sequences producing significant alignments: (Bits) Value seq99 113 5e-20 >seq99 Length=333813 Score = 113 bits (124), Expect = 5e-20 Identities = 228/331 (69%), Gaps = 7/331 (2%) Strand=Plus/Minus Query 16985 CCCTCGTCTCTGCTGATAAGTTCGTTAGAAAATGTCAACCCGGGCATCTTTCCTCGTTTC 17044 ||||| || | | ||| || ||||| || || |||| ||| ||||| || || ||| Sbjct 93384 CCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGCCCCCGCTTC 93325 Query 17045 TTTAACCAAAATATCGCGGCGAACGACCCAGAAAAGAATATACCCTCGACGGATGCAAAC 17104 || | ||| | || | | ||| || || || |||||||| ||||| ||| | ||||| Sbjct 93324 TTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATATGCCCTCCACGCAGGCAAAG 93265 Query 17105 GCGATTAATCGTTCGGCGTACGTCGCGTCTTTGTTACGA-ATCCATTTCTGCACCCACTC 17163 |||| | || |||||| | |||| ||| | | ||| ||||| ||| || |||| || Sbjct 93264 GCGACCAGGCGCTCGGCGAA--TCGC-TCTGCGCT-CGAGATCCACTTCAGCGCCCAGTC 93209 Query 17164 GGCTTTTTGCTTTATGCAATCC-ATCGTTTCTATGGCCTTAAATAATTTCTCTTTTTCCT 17222 ||| || | ||| | || | | ||| || |||| | || | | || || | | Sbjct 93208 GGCCTTCTTCTTGAC-CACTGGTACCGTCTCGGTGGCGTGGAACAGCATGTCCTTCTGCC 93150 Query 17223 GTAGGTCGATTATATACGTATCGATGAGTAGGCTGTACATTTCGGAGTGTATGTTCTCCA 17282 | |||| | || |||| ||| | || ||||||||||| ||| ||| |||||||| | Sbjct 93149 GCGGGTCCTTGATGTACGCATCCAGCAGCAGGCTGTACATCTCGCTGTGGATGTTCTCGA 93090 Query 17283 TGGCTATCTGAAATCCGTAAAAGCATCGGGC 17313 |||| ||||| || ||||| ||| ||||| Sbjct 93089 TGGCGATCTGGAAGCCGTAGAAGGCGCGGGC 93059 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 517543180474320