Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq99 170 2e-37 seq133 163 3e-35 seq90 136 4e-27 seq149 116 4e-21 >seq99 Length=333813 Score = 170 bits (188), Expect = 2e-37 Identities = 249/345 (72%), Gaps = 9/345 (3%) Strand=Plus/Plus Query 116848 CTTCTACGGCTTTCAGATCGCCATGGAGAACGTGCACTCGGAAATGTATTCGACC--CTC 116905 |||||||||||| ||||||||||| |||||| | ||| || ||||| | || || Sbjct 93067 CTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTA--CAGCCTGCTG 93124 Query 116906 ATCGACACGTACGTGCGCTCTTCGGAGGAGAAGCTCCGTTTGTTGAACGCCATCGAGACG 116965 | || ||||| | || | ||||| | |||| |||||| ||||||| Sbjct 93125 CTGGATGCGTACATCAAGGACCCGCGGCAGAAGGACATGCTGTTCCACGCCACCGAGACG 93184 Query 116966 ATGCC-GTGCGTCAAAGAGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGC 117024 | || ||| ||||| |||||||||| ||||||||| |||||| | || |||| Sbjct 93185 GTACCAGTG-GTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCGCAGAG-- 93241 Query 117025 CGCCTTCGGCGAGCGCCTGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAG 117084 || |||| |||||||||||| ||||| || ||| |||||| | ||||| || ||| Sbjct 93242 CGA-TTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTC 93300 Query 117085 TTTCGCCGCCATATTTTGGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAA 117144 ||| | |||| | ||| | ||||| || || |||||||| || ||||| ||| ||| Sbjct 93301 CTTCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAA 93360 Query 117145 CGAGCTCATCTCCAGGGACGAGGGTCTGCATTGCGACTTTGCCTG 117189 ||||||||||||| | || ||||| ||||| |||||||||||| Sbjct 93361 CGAGCTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGCCTG 93405 >seq133 Length=726431 Score = 163 bits (180), Expect = 3e-35 Identities = 173/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || ||||| |||||||| ||||| || |||| || || || || Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 |||| | | | | | |||| || || | ||||| ||||||||||| | |||||| Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| || ||||| ||||| || |||| |||||||| |||||||||| Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGTGTTGCGCTTGAGGGGCGGC 40917 |||||||||||| |||| ||||| || ||| ||||| || | |||||| Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 170690 Score = 131 bits (144), Expect = 2e-25 Identities = 110/135 (81%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 40783 GACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCGGGCAAACAGCTGGAC 40842 ||||| |||||||||||| ||||||| || || || |||| || ||||| ||||| || Sbjct 171052 GACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAG 170993 Query 40843 GACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACGCTGCATCTAGTGTTG 40902 |||| |||||||| |||||||||||||||||||||| |||| ||||| || ||| || Sbjct 170992 GACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCACCTGGTGCTG 170933 Query 40903 CGCTTGAGGGGCGGC 40917 ||| || | |||||| Sbjct 170932 CGCCTGCGCGGCGGC 170918 >seq90 Length=671320 Score = 136 bits (150), Expect = 4e-27 Identities = 159/214 (74%), Gaps = 3/214 (1%) Strand=Plus/Plus Query 116984 AAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCCTG 117043 ||||| |||||||| || | ||||||| |||| | | || ||||| |||| ||| Sbjct 288301 AAGGCGGAGTGGGCCCTCAGGTGGATCG---GCAGCGGGTCCAGCTTCGCGCAGCGGCTG 288357 Query 117044 GTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTTGG 117103 |||||||| || ||| |||||| || |||| || ||| || ||||| | ||| Sbjct 288358 GTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTACTGG 288417 Query 117104 CTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGGAC 117163 |||||||| || ||||||||||||||| || ||| ||||||||||||||| | || Sbjct 288418 CTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCGTGAT 288477 Query 117164 GAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGT 117197 ||||| ||||| |||||||||||| | |||| Sbjct 288478 GAGGGCCTGCACACCGACTTTGCCTGCCTCCTGT 288511 Score = 91.5 bits (100), Expect = 2e-13 Identities = 113/155 (73%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 116648 TACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTGTCCAAGGACACG 116707 ||||| ||||| | || | |||||| || |||||||||||||| ||| |||| | Sbjct 287326 TACAAGCAGGCCCAAGCCAGCTACTGGACTGTGGAGGAGGTGGACCTATCCGCCGACATG 287385 Query 116708 AGCGACTGGGAGCGCTTGAACGACAACGAGCGCCATTTCATCAAGCACGTGCTGGCCTTT 116767 | || |||| ||| ||| |||| |||||||||| |||||| || | || ||||| Sbjct 287386 CGGGATTGGGTGCGACTGACCGACGACGAGCGCCACTTCATCTCCTACATTCTCGCCTTC 287445 Query 116768 TTCGCCGCCAGCGACGGCATCGTCAACGAGAATCT 116802 || || ||| |||||| ||||| |||||| || Sbjct 287446 TTTGCGGCCTCCGACGGTATCGTGCTCGAGAACCT 287480 >seq149 Length=203194 Score = 116 bits (128), Expect = 4e-21 Identities = 115/149 (77%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 40768 AAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTCATCTACGCG 40827 |||| || |||| || || ||||| |||||| ||||||| || || || |||| ||| Sbjct 6997 AAGGCCAAGATTCAGGATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTGCG 6938 Query 40828 GGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAGGAGGCCACG 40887 ||||| |||||||| || | |||||||| |||||||||||||||||||||| |||| Sbjct 6937 GGCAAGCAGCTGGAGGATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACC 6878 Query 40888 CTGCATCTAGTGTTGCGCTTGAGGGGCGG 40916 || || || || ||||| || | || || Sbjct 6877 CTCCACCTGGTCCTGCGCCTGCGTGGTGG 6849 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515216791350240