Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_002593.1
Length=100999
Score E
Sequences producing significant alignments: (Bits) Value
seq133 140 2e-28
seq149 82.4 5e-11
>seq133
Length=726431
Score = 140 bits (154), Expect = 2e-28
Identities = 167/227 (74%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | |||||||||||| | || || ||||| |||||||||||||||
Sbjct 170691 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170750
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| || || || || |||||||||||| ||
Sbjct 170751 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 170810
Query 34283 ACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACG 34342
| || ||||||||| ||||| ||| | || | | || | |||| || || ||
Sbjct 170811 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACT 170870
Query 34343 TCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389
|| | ||| ||||| ||||| || || || || || |||||||||||
Sbjct 170871 TCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
Score = 102 bits (112), Expect = 5e-17
Identities = 103/134 (77%), Gaps = 0/134 (0%)
Strand=Plus/Plus
Query 34163 CCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGAC 34222
||||||||||| | |||||||||||| | || || ||||| |||||||||||||||
Sbjct 170919 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170978
Query 34223 AGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGC 34282
|| ||| |||| || | ||||||||| || || || || ||||| ||||| |||
Sbjct 170979 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 171038
Query 34283 ACGCTCTCCTTGTC 34296
| || |||||||||
Sbjct 171039 ATGCCCTCCTTGTC 171052
>seq149
Length=203194
Score = 82.4 bits (90), Expect = 5e-11
Identities = 101/138 (73%), Gaps = 0/138 (0%)
Strand=Plus/Plus
Query 34159 GAATCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTC 34218
|| ||| || ||||| | ||| |||||||| | || || ||||| |||||||||||
Sbjct 6845 GATTCCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTC 6904
Query 34219 GGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGAC 34278
|||||| ||| | || |||| ||||||||| || || || || ||||| |||||
Sbjct 6905 GGACAGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGG 6964
Query 34279 GGGCACGCTCTCCTTGTC 34296
||| | | |||||| ||
Sbjct 6965 GGGGATTCCCTCCTTATC 6982
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 323070527397440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |