Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_002687.1
Length=335593
Score E
Sequences producing significant alignments: (Bits) Value
seq43 96.9 7e-15
>seq43
Length=247289
Score = 96.9 bits (106), Expect = 7e-15
Identities = 228/344 (66%), Gaps = 3/344 (1%)
Strand=Plus/Minus
Query 248977 CGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTG 249036
||| || | || || ||| | || ||||| ||||||||||| ||| | | ||||||
Sbjct 177839 CGCAGGTTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTG 177780
Query 249037 AGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTT 249096
||| ||||| || | ||||| | | |||| |||| ||||| || ||||||||
Sbjct 177779 TCCTCCTGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTG 177720
Query 249097 AAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATC 249156
|| || ||| || ||||| | ||||||||| ||||| || | | |||||||
Sbjct 177719 AAGGAGTGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATC 177660
Query 249157 CGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTC 249216
|| || | ||| || |||||| || || || || ||| | || ||||| ||| |
Sbjct 177659 CGTGCCACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATG 177600
Query 249217 CTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGG 249273
|| || ||| | |||||| | | | | |||||| || || || |||||
Sbjct 177599 CTGCGCGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGC 177540
Query 249274 TCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGA 249317
| || |||||||| | || ||||| ||||| || || ||
Sbjct 177539 GCCTTTGCCATGTACCTCGAGCCCTGGCATGCCGACATCTTCGA 177496
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1073761254645632
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |