Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_002687.1 Length=335593 Score E Sequences producing significant alignments: (Bits) Value seq43 96.9 7e-15 >seq43 Length=247289 Score = 96.9 bits (106), Expect = 7e-15 Identities = 228/344 (66%), Gaps = 3/344 (1%) Strand=Plus/Minus Query 248977 CGCTGGATGACACATGCCACACCGACGCTCTTCAACGCCGGTACCGTCAACAATCAGCTG 249036 ||| || | || || ||| | || ||||| ||||||||||| ||| | | |||||| Sbjct 177839 CGCAGGTTCACTCACGCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTG 177780 Query 249037 AGCTCGTGCTTTCTTCTTGCCATGCAAGACGACTCTGTCGACGGCATTTATGACACGCTT 249096 ||| ||||| || | ||||| | | |||| |||| ||||| || |||||||| Sbjct 177779 TCCTCCTGCTTCCTAGTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTG 177720 Query 249097 AAACAGACGGCGAAGATTTCTAAATTCGCGGGCGGAATCGGTCTCTCCGTCTCCAACATC 249156 || || ||| || ||||| | ||||||||| ||||| || | | ||||||| Sbjct 177719 AAGGAGTGCGCGGCCATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATC 177660 Query 249157 CGAGCGAAGGGTTCGTACATCAAAGGTACAAATGGGGTCAGTGATGGTATCGTACCCCTC 249216 || || | ||| || |||||| || || || || ||| | || ||||| ||| | Sbjct 177659 CGTGCCACGGGGTCCTACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATG 177600 Query 249217 CTTCGATGCTTTGAGTCCACCGCCAGGTTCATCAACCAGGCCGGGCGC---CGAAAGGGG 249273 || || ||| | |||||| | | | | |||||| || || || ||||| Sbjct 177599 CTGCGCGTCTTCAACGACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGC 177540 Query 249274 TCGTTCGCCATGTATTTGGAAGTGTGGCACGCCGATATATTGGA 249317 | || |||||||| | || ||||| ||||| || || || Sbjct 177539 GCCTTTGCCATGTACCTCGAGCCCTGGCATGCCGACATCTTCGA 177496 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1073761254645632