Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_003102.1
Length=139342
Score E
Sequences producing significant alignments: (Bits) Value
seq43 136 4e-27
seq133 91.5 1e-13
>seq43
Length=247289
Score = 136 bits (150), Expect = 4e-27
Identities = 297/441 (67%), Gaps = 9/441 (2%)
Strand=Plus/Plus
Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164
|| |||||| || |||| ||||||| || || | |||||| || || ||||| ||
Sbjct 174918 CTGGTCCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCC 174977
Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224
||||||||| ||| ||||||| ||||| || || | || || | || ||| || | ||
Sbjct 174978 CGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCA-AAGTTGG 175036
Query 22225 CAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281
||| ||||| ||| ||||| ||||| ||||||||| |||| || ||||| ||
Sbjct 175037 --GGTCCGACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACGCGCCGCGATCCGC 175094
Query 22282 GGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341
|||||| | | || || ||| | || ||||| || ||||||||||| | |||
Sbjct 175095 GGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAG 175154
Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401
| | || || || | | ||| || |||||||| | | | || ||
Sbjct 175155 CGCGTCGGGGAT---GTCCAGGCCCTGCACCGACCCGTTGCCCGCCACCAGCTCGTTCTT 175211
Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461
|| ||| ||||| || | | ||| | || | | ||| || ||||||||||
Sbjct 175212 CATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCAC 175271
Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521
||||||||||||| |||||||| ||| |||||| ||| |||| ||||| |
Sbjct 175272 CGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGCA 175331
Query 22522 TTCATTGTTTCCCAGTATCTG 22542
|| ||||| ||||| |||||
Sbjct 175332 CTCGTTGTTGCCCAGGATCTG 175352
Score = 118 bits (130), Expect = 9e-22
Identities = 230/340 (68%), Gaps = 0/340 (0%)
Strand=Plus/Plus
Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498
|||| || | ||| |||||||| ||||||||||| | |||||| |||||| | |||
Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553
Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558
||| ||||| || ||||| || || |||| |||| | || | ||||| ||||||| |
Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613
Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618
||||| | |||| ||| | || || | || || | |||||| | |
Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGC 177673
Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678
| || ||||| || | || || || || |||||| | ||||| ||||||||||
Sbjct 177674 TCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGA 177733
Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738
|||||||||||||||| | || | | || | ||| || || |||| || | ||
Sbjct 177734 TGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGG 177793
Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778
| || |||| |||||| || || |||||| || ||
Sbjct 177794 GGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
>seq133
Length=726431
Score = 91.5 bits (100), Expect = 1e-13
Identities = 157/228 (69%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251
|||||| || ||||| ||||| ||||| ||||| || || || |||| || || | ||
Sbjct 170918 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTC 170859
Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311
||||| | || | || || | || ||||||||| ||| | || ||||||||
Sbjct 170858 CGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 170799
Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371
|||||| || || || || ||||| ||| | || ||| || || ||| || ||
Sbjct 170798 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 170739
Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419
||| || || || || || || || ||||| || | ||| | |||||
Sbjct 170738 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170691
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 445764316042080
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |