Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq43 136 4e-27 seq133 91.5 1e-13 >seq43 Length=247289 Score = 136 bits (150), Expect = 4e-27 Identities = 297/441 (67%), Gaps = 9/441 (2%) Strand=Plus/Plus Query 22105 CTTGTCCACTGTAAACTGTATGGCGTTTGCGGCCGGTTTGGTGCGAAGATAATACATGCC 22164 || |||||| || |||| ||||||| || || | |||||| || || ||||| || Sbjct 174918 CTGGTCCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCC 174977 Query 22165 CGTCTTCAGACCCATCTTCCACGCGTAAAAATGTATCGACGTCAATTTTCCATAACTCGG 22224 ||||||||| ||| ||||||| ||||| || || | || || | || ||| || | || Sbjct 174978 CGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCA-AAGTTGG 175036 Query 22225 CAAGTC---CATGTACACATTGAACGACTGACTCTGATCGATAAACGCTCCTCGATCGGC 22281 ||| ||||| ||| ||||| ||||| ||||||||| |||| || ||||| || Sbjct 175037 --GGTCCGACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACGCGCCGCGATCCGC 175094 Query 22282 GGCCATATTTATCAATGTACGCATCGACATTTCCCATACGGTCTTGTACAGTTGCCTGAT 22341 |||||| | | || || ||| | || ||||| || ||||||||||| | ||| Sbjct 175095 GGCCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAG 175154 Query 22342 CTCTAACGGTATCGATTCGATCCTCTGGACGGACCCGTTATTGTGTATGATCAAATTTTT 22401 | | || || || | | ||| || |||||||| | | | || || Sbjct 175155 CGCGTCGGGGAT---GTCCAGGCCCTGCACCGACCCGTTGCCCGCCACCAGCTCGTTCTT 175211 Query 22402 AATCGTATCGTTCCACAAACCGATGGCGGTCAAATCTTTGACCAGATGACGGTTCACCAC 22461 || ||| ||||| || | | ||| | || | | ||| || |||||||||| Sbjct 175212 CATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCAC 175271 Query 22462 TTGAAACTCGCCGGACAAGACGCGGCGTTGGTAAATGTTGGATGTGAACGGTTCGAAAGA 22521 ||||||||||||| |||||||| ||| |||||| ||| |||| ||||| | Sbjct 175272 CGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGCA 175331 Query 22522 TTCATTGTTTCCCAGTATCTG 22542 || ||||| ||||| ||||| Sbjct 175332 CTCGTTGTTGCCCAGGATCTG 175352 Score = 118 bits (130), Expect = 9e-22 Identities = 230/340 (68%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 23439 AGTCCAACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTAT 23498 |||| || | ||| |||||||| ||||||||||| | |||||| |||||| | ||| Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 23499 TGCCGCCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGAC 23558 ||| ||||| || ||||| || || |||| |||| | || | ||||| ||||||| | Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 23559 CGTTGGACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGT 23618 ||||| | |||| ||| | || || | || || | |||||| | | Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGC 177673 Query 23619 GGAAACCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGA 23678 | || ||||| || | || || || || |||||| | ||||| |||||||||| Sbjct 177674 TCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGA 177733 Query 23679 TGCCCTCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGG 23738 |||||||||||||||| | || | | || | ||| || || |||| || | || Sbjct 177734 TGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGG 177793 Query 23739 GCGTAGCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAA 23778 | || |||| |||||| || || |||||| || || Sbjct 177794 GGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 >seq133 Length=726431 Score = 91.5 bits (100), Expect = 1e-13 Identities = 157/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 31192 CATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTC 31251 |||||| || ||||| ||||| ||||| ||||| || || || |||| || || | || Sbjct 170918 CATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTC 170859 Query 31252 CGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCA 31311 ||||| | || | || || | || ||||||||| ||| | || |||||||| Sbjct 170858 CGACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCA 170799 Query 31312 GCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTATAA 31371 |||||| || || || || ||||| ||| | || ||| || || ||| || || Sbjct 170798 GCAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAA 170739 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACTTAGACTGAGGGGCGG 31419 ||| || || || || || || || ||||| || | ||| | ||||| Sbjct 170738 CATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170691 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445764316042080