Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq133 100 2e-16 >seq133 Length=726431 Score = 100 bits (110), Expect = 2e-16 Identities = 159/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 21245 CACCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCA 21304 ||||| | |||| ||||| ||||| || ||| |||| ||||| || | ||| Sbjct 23485 CACCCACCCACCCCGGTAGTCGGCGTGCATGCCGGCGTAGGCCGCGCCAAAGTGGCGCCA 23544 Query 21305 CTGGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGAAGCCCTGCGCCGC 21364 |||||| ||||||||||| ||||| |||||||| ||||| || | ||| |||| | Sbjct 23545 CTGGAAGCCGTACACCGGACCCAGGTCGCCCTCCTCGCGGTGTCCCAGGCCGCGCGCGTC 23604 Query 21365 CAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCGCGGCGCGACAGTTCGGT 21424 || || |||| ||||||| ||||||| || | ||||||||| | ||| | Sbjct 23605 CAGGAACTCGCGCGACCCGTTGCCGTCCCAGATGTGCACGCCGCGGTCGGCCAGCAGGCG 23664 Query 21425 GGAGTCGGTGGAGCCCCTGATAAACCACAGCAACTCCTCCACGACGCC 21472 | || ||| | ||| || |||||| |||| |||||| | ||||| Sbjct 23665 CGCGTTGGTCGCGCCGGAGACAAACCAGAGCAGCTCCTCAGCCACGCC 23712 Score = 93.3 bits (102), Expect = 4e-14 Identities = 83/104 (80%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 21018 GTCAGGAGGGCGTAGCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTC 21077 || |||||||||||| |||||||| || || ||||| ||||| | ||||||||| | | Sbjct 22010 GTGAGGAGGGCGTAGGATGCGATGTTGAAGGGCACCCCCAGGCCGAGGTCGGCGGAGCGC 22069 Query 21078 TGGTACAGCTGGCAGGACAGCTCCCCCCGAGCCACGTAAAACTG 21121 ||||||| |||||| |||||||| || |||||| | ||||| Sbjct 22070 TGGTACATCTGGCACGACAGCTCGCCGTCTGCCACGAAGAACTG 22113 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427774050143520