Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq299 95.1 2e-14 seq90 93.3 6e-14 >seq299 Length=256364 Score = 95.1 bits (104), Expect = 2e-14 Identities = 171/250 (68%), Gaps = 0/250 (0%) Strand=Plus/Minus Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502 ||| ||||||||||||||||| |||| |||||| || || |||||||| | |||| || Sbjct 156174 GAAGCCGTGCGTCAGGTGGCCGCCGTGGGGCAGGTCCAGGCCCATGATGCGGTCGTGGGG 156115 Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562 || | | | |||||||| ||||||||||| ||||| |||| || || || Sbjct 156114 CTTGAGCAGGGCGGTGTACACCGCAAAGTTGGCAGGGGAGCCGGAGTGGGGCTGCACGTT 156055 Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622 ||| ||||| || | || || ||| || || ||| ||| ||| Sbjct 156054 CACACCCCACTCTGCGGGGTCCAGGCCGAAGGCCGCCAGCGCGCGCGACTGGCACAGCGA 155995 Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682 ||| | ||||| |||||||| ||||| ||||| ||| |||||| |||||| Sbjct 155994 CTCGGCCTGGTCGATGAACTCGTTGCCACCGTAGTAGCGCGCGCCGGGCAGACCCTCGCT 155935 Query 127683 GTACTTGTTG 127692 |||||||||| Sbjct 155934 GTACTTGTTG 155925 >seq90 Length=671320 Score = 93.3 bits (102), Expect = 6e-14 Identities = 111/148 (75%), Gaps = 2/148 (1%) Strand=Plus/Plus Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTT 125485 |||||||| || ||| ||| ||||||||| |||| || || | ||||| | |||||| Sbjct 288355 CTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTG-CCATCTA 288413 Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545 |||||||||||||| ||||||||||| || || | |||||| | || || || Sbjct 288414 CTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473 Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573 || |||||||| ||| ||||||||| Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCC 288501 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741055735548240