Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_004156.2
Length=231621
Score E
Sequences producing significant alignments: (Bits) Value
seq299 95.1 2e-14
seq90 93.3 6e-14
>seq299
Length=256364
Score = 95.1 bits (104), Expect = 2e-14
Identities = 171/250 (68%), Gaps = 0/250 (0%)
Strand=Plus/Minus
Query 127443 GAATCCGTGCGTCAGGTGGCCTCCGTCGGGCAGATCGAGTCCCATGATTCTACCGTGCGG 127502
||| ||||||||||||||||| |||| |||||| || || |||||||| | |||| ||
Sbjct 156174 GAAGCCGTGCGTCAGGTGGCCGCCGTGGGGCAGGTCCAGGCCCATGATGCGGTCGTGGGG 156115
Query 127503 TTTAACGATTCCAGTGTACACGGCAAAGTTGGCCATCGAGCCCGAGTACGGTTGTACACA 127562
|| | | | |||||||| ||||||||||| ||||| |||| || || ||
Sbjct 156114 CTTGAGCAGGGCGGTGTACACCGCAAAGTTGGCAGGGGAGCCGGAGTGGGGCTGCACGTT 156055
Query 127563 CACTCCCCATTCGGACTCGTTCAAATTGAACGCTCTGAGACATCGCTGCTGTGCTAGCAG 127622
||| ||||| || | || || ||| || || ||| ||| |||
Sbjct 156054 CACACCCCACTCTGCGGGGTCCAGGCCGAAGGCCGCCAGCGCGCGCGACTGGCACAGCGA 155995
Query 127623 TTCGATGCGATCGATAAACTCGTTACCACCATAGTATCGCTTTCCGGGCCTACCCTCCGA 127682
||| | ||||| |||||||| ||||| ||||| ||| |||||| ||||||
Sbjct 155994 CTCGGCCTGGTCGATGAACTCGTTGCCACCGTAGTAGCGCGCGCCGGGCAGACCCTCGCT 155935
Query 127683 GTACTTGTTG 127692
||||||||||
Sbjct 155934 GTACTTGTTG 155925
>seq90
Length=671320
Score = 93.3 bits (102), Expect = 6e-14
Identities = 111/148 (75%), Gaps = 2/148 (1%)
Strand=Plus/Plus
Query 125427 CTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGG-TAGTTTTGCGGCCATCTT 125485
|||||||| || ||| ||| ||||||||| |||| || || | ||||| | ||||||
Sbjct 288355 CTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTG-CCATCTA 288413
Query 125486 TTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTATATCTCG 125545
|||||||||||||| ||||||||||| || || | |||||| | || || ||
Sbjct 288414 CTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473
Query 125546 AGACGAGGGCCTACACTGTGACTTTGCC 125573
|| |||||||| ||| |||||||||
Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCC 288501
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 741055735548240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |