Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_005261.2 Length=137821 Score E Sequences producing significant alignments: (Bits) Value seq361 96.9 3e-15 seq84 87.8 2e-12 >seq361 Length=163187 Score = 96.9 bits (106), Expect = 3e-15 Identities = 111/145 (77%), Gaps = 7/145 (5%) Strand=Plus/Plus Query 47347 CCGCG-CACGAGCGTGGTGAAGCACAGGTTGTGCGCCTGGATGATGCTGGGGTAGAGGCT 47405 ||||| || ||||||||| ||||||||||||||||| ||||||||||| || ||||| Sbjct 65037 CCGCGGCAGCAGCGTGGTGTAGCACAGGTTGTGCGCCATCATGATGCTGGGATACAGGCT 65096 Query 47406 GGCAAAGTCCAGC---ACCATGACGGGGTCGACGTGGAAGCCCGACTCGGGCTCCAGGAC 47462 ||||||||||||| ||| ||| |||| ||| | | || | | |||||||| || Sbjct 65097 GGCAAAGTCCAGCGTGGCCA--CCGGAGTCG-CGTAGTACCCAGCTTTTGGCTCCAGTAC 65153 Query 47463 CTTGGCGCCCTGATACCCGACGGCG 47487 | |||| |||| ||| | ||| || Sbjct 65154 CGTGGCACCCTCGTACGCCACGCCG 65178 >seq84 Length=279745 Score = 87.8 bits (96), Expect = 2e-12 Identities = 84/106 (79%), Gaps = 4/106 (4%) Strand=Plus/Minus Query 47359 GTGGTGAAGCACAGGTTGTGCGCCTGGATGATGCTGGGGTAGAGG--CTGGCAAAGTCCA 47416 |||| | |||| ||||||| || ||| ||| |||||||||| |||| ||||||| Sbjct 102228 GTGGAGTAGCATAGGTTGTAGGCGATGATCATGGAGGGGTAGAGGGACTGG--AAGTCCA 102171 Query 47417 GCACCATGACGGGGTCGACGTGGAAGCCCGACTCGGGCTCCAGGAC 47462 |||| ||||| |||||| ||| ||||| |||||| ||||||| ||| Sbjct 102170 GCACGATGACCGGGTCGGCGTAGAAGCGCGACTCCGGCTCCATGAC 102125 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 440897138796240