Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_005261.2
Length=137821
Score E
Sequences producing significant alignments: (Bits) Value
seq361 96.9 3e-15
seq84 87.8 2e-12
>seq361
Length=163187
Score = 96.9 bits (106), Expect = 3e-15
Identities = 111/145 (77%), Gaps = 7/145 (5%)
Strand=Plus/Plus
Query 47347 CCGCG-CACGAGCGTGGTGAAGCACAGGTTGTGCGCCTGGATGATGCTGGGGTAGAGGCT 47405
||||| || ||||||||| ||||||||||||||||| ||||||||||| || |||||
Sbjct 65037 CCGCGGCAGCAGCGTGGTGTAGCACAGGTTGTGCGCCATCATGATGCTGGGATACAGGCT 65096
Query 47406 GGCAAAGTCCAGC---ACCATGACGGGGTCGACGTGGAAGCCCGACTCGGGCTCCAGGAC 47462
||||||||||||| ||| ||| |||| ||| | | || | | |||||||| ||
Sbjct 65097 GGCAAAGTCCAGCGTGGCCA--CCGGAGTCG-CGTAGTACCCAGCTTTTGGCTCCAGTAC 65153
Query 47463 CTTGGCGCCCTGATACCCGACGGCG 47487
| |||| |||| ||| | ||| ||
Sbjct 65154 CGTGGCACCCTCGTACGCCACGCCG 65178
>seq84
Length=279745
Score = 87.8 bits (96), Expect = 2e-12
Identities = 84/106 (79%), Gaps = 4/106 (4%)
Strand=Plus/Minus
Query 47359 GTGGTGAAGCACAGGTTGTGCGCCTGGATGATGCTGGGGTAGAGG--CTGGCAAAGTCCA 47416
|||| | |||| ||||||| || ||| ||| |||||||||| |||| |||||||
Sbjct 102228 GTGGAGTAGCATAGGTTGTAGGCGATGATCATGGAGGGGTAGAGGGACTGG--AAGTCCA 102171
Query 47417 GCACCATGACGGGGTCGACGTGGAAGCCCGACTCGGGCTCCAGGAC 47462
|||| ||||| |||||| ||| ||||| |||||| ||||||| |||
Sbjct 102170 GCACGATGACCGGGTCGGCGTAGAAGCGCGACTCCGGCTCCATGAC 102125
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 440897138796240
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |