Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq88 82.4 5e-11 >seq88 Length=544131 Score = 82.4 bits (90), Expect = 5e-11 Identities = 130/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Minus Query 44369 GTCAAGGTGAGGCTGAGGACCCCCAGGCACCCAGAGATGGGCGACAAGTTTGCGTCGTTC 44428 ||||||||| | || || | | ||| ||| ||| ||||||||||||| | || | Sbjct 449466 GTCAAGGTGCTGGTGCGGCACACACGGCGCCCCGAGCTGGGCGACAAGTTCTCCTCTCGC 449407 Query 44429 -ACGGCGCAAAAGGG-GACATGCGGAGCCGTCCTGACCCAGGAGGACATGCCCTTCGACA 44486 ||||| || ||||| | | || || || || || ||| ||| | |||||| | Sbjct 449406 CACGGC-CAGAAGGGCGTGGTTGGGTGCA-TCGTGCCCGAGGCCGACCTCCCCTTCTCCG 449349 Query 44487 AAAACGGGGTGGTGCCCGACCTCATCATCAACCCCCACGCCTTTCCCTCCAGGATGACCG 44546 | |||||||||||||||||| ||||| ||||| |||| ||| |||||| | ||||| | Sbjct 449348 AGCGCGGGGTGGTGCCCGACCTGATCATGAACCCGCACGGCTTCCCCTCCCGCATGACTG 449289 Query 44547 T 44547 | Sbjct 449288 T 449288 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340136049610302