Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_005946.1 Length=105903 Score E Sequences producing significant alignments: (Bits) Value seq88 87.8 1e-12 >seq88 Length=544131 Score = 87.8 bits (96), Expect = 1e-12 Identities = 131/181 (72%), Gaps = 4/181 (2%) Strand=Plus/Plus Query 71416 ACGGTCATCCTGGAGGGAAAGGCGTGGGGGTTGATGATGAGGTCGGGCACCACCCCGTCC 71475 || ||||| | |||||| ||| |||| ||||| ||||| |||||||||||||||||| | Sbjct 449288 ACAGTCATGCGGGAGGGGAAGCCGTGCGGGTTCATGATCAGGTCGGGCACCACCCCGCGC 449347 Query 71476 TTGTCGAAGGGCATGTCCTCCTGGGTCAGGACAGCTCCGCATGTC-CCCTTTTGCGCCGT 71534 | | |||||| | ||| ||| || || || || || | | ||||| || ||||| Sbjct 449348 TCGGAGAAGGGGAGGTCGGCCTCGGGCACGA-TGCACCCAACCACGCCCTTCTG-GCCGT 449405 Query 71535 -GAATGACGCAAACTTGTCGCCCATCTCTGGGTGCCTGGGGGTCCTCAGCCTCACCTTGA 71593 | || | ||||||||||||| ||| ||| ||| | | || || | |||||||| Sbjct 449406 GGCGAGAGGAGAACTTGTCGCCCAGCTCGGGGCGCCGTGTGTGCCGCACCAGCACCTTGA 449465 Query 71594 C 71594 | Sbjct 449466 C 449466 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 338763255867696