Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_006639.1
Length=24748
Score E
Sequences producing significant alignments: (Bits) Value
seq317 109 9e-20
seq142 109 9e-20
seq71 105 1e-18
seq335 100 4e-17
seq307 100 4e-17
seq97 100 4e-17
seq14 82.4 1e-11
>seq317
Length=12656
Score = 109 bits (120), Expect = 9e-20
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||||||||| || ||||| ||
Sbjct 1405 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGCCGTGGCGGT 1346
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 1345 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 1286
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | ||||| | ||| ||||||||||| || ||||| || |||
Sbjct 1285 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 1226
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 1225 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 1188
>seq142
Length=842409
Score = 109 bits (120), Expect = 9e-20
Identities = 155/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| ||
Sbjct 494098 CGCGATAACATCCAGGGCATCACCAAGCCGGCTATCCGTCGCCTGGCCCGCCGTGGCGGT 494157
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 494158 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 494217
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | ||||| | ||| ||||||||||| || ||||| || |||
Sbjct 494218 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 494277
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 494278 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 494315
>seq71
Length=477918
Score = 105 bits (116), Expect = 1e-18
Identities = 154/218 (71%), Gaps = 0/218 (0%)
Strand=Plus/Minus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 237750 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 237691
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 237690 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 237631
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | ||||| | ||| ||||||||||| || ||||| || |||
Sbjct 237630 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 237571
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 237570 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 237533
>seq335
Length=45362
Score = 100 bits (110), Expect = 4e-17
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 15518 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 15577
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 15578 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 15637
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | || || | ||| ||||||||||| || ||||| || |||
Sbjct 15638 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 15697
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 15698 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 15735
>seq307
Length=693
Score = 100 bits (110), Expect = 4e-17
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 461 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 520
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 521 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 580
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | || || | ||| ||||||||||| || ||||| || |||
Sbjct 581 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 640
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 641 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 678
>seq97
Length=1144356
Score = 100 bits (110), Expect = 4e-17
Identities = 153/218 (70%), Gaps = 0/218 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 308805 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 308864
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 308865 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 308924
Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636
||| ||| | | || || | ||| ||||||||||| || ||||| || |||
Sbjct 308925 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 308984
Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674
|| | || | ||||| || | || || || |||||
Sbjct 308985 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 309022
>seq14
Length=546
Score = 82.4 bits (90), Expect = 1e-11
Identities = 95/128 (74%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516
|| ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| ||
Sbjct 409 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 468
Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576
|||||||| || || || |||| || |||| || | || | ||| | |||||
Sbjct 469 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 528
Query 16577 AAGACCGT 16584
||| |||
Sbjct 529 GAGAACGT 536
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 79074858049182
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |