Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_006639.1 Length=24748 Score E Sequences producing significant alignments: (Bits) Value seq317 109 9e-20 seq142 109 9e-20 seq71 105 1e-18 seq335 100 4e-17 seq307 100 4e-17 seq97 100 4e-17 seq14 82.4 1e-11 >seq317 Length=12656 Score = 109 bits (120), Expect = 9e-20 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||||||||| || ||||| || Sbjct 1405 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGTCTGGCCCGCCGTGGCGGT 1346 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 1345 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 1286 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | ||||| | ||| ||||||||||| || ||||| || ||| Sbjct 1285 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 1226 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 1225 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 1188 >seq142 Length=842409 Score = 109 bits (120), Expect = 9e-20 Identities = 155/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| ||||||||||| ||||| || ||||| || Sbjct 494098 CGCGATAACATCCAGGGCATCACCAAGCCGGCTATCCGTCGCCTGGCCCGCCGTGGCGGT 494157 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 494158 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 494217 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | ||||| | ||| ||||||||||| || ||||| || ||| Sbjct 494218 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 494277 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 494278 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 494315 >seq71 Length=477918 Score = 105 bits (116), Expect = 1e-18 Identities = 154/218 (71%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 237750 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 237691 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 237690 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 237631 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | ||||| | ||| ||||||||||| || ||||| || ||| Sbjct 237630 GAGAACGTCGTGCGCGATGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 237571 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 237570 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 237533 >seq335 Length=45362 Score = 100 bits (110), Expect = 4e-17 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 15518 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 15577 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 15578 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 15637 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | || || | ||| ||||||||||| || ||||| || ||| Sbjct 15638 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 15697 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 15698 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 15735 >seq307 Length=693 Score = 100 bits (110), Expect = 4e-17 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 461 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 520 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 521 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 580 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | || || | ||| ||||||||||| || ||||| || ||| Sbjct 581 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 640 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 641 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 678 >seq97 Length=1144356 Score = 100 bits (110), Expect = 4e-17 Identities = 153/218 (70%), Gaps = 0/218 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 308805 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 308864 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 308865 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 308924 Query 16577 AAGACCGTTATCCATGATGCTTTCCACTATACCGAGCACGCTAAACGTAAGACTGTCACC 16636 ||| ||| | | || || | ||| ||||||||||| || ||||| || ||| Sbjct 308925 GAGAACGTCGTGCGCGACGCCGTGACCTACACCGAGCACGCCCGCCGCAAGACCGTGACC 308984 Query 16637 TCCATGGATATCGTCTATGCATTGAAACGTCAAGGCCG 16674 || | || | ||||| || | || || || ||||| Sbjct 308985 GCCTTCGACGTGGTCTACGCCCTCAAGCGCCAGGGCCG 309022 >seq14 Length=546 Score = 82.4 bits (90), Expect = 1e-11 Identities = 95/128 (74%), Gaps = 0/128 (0%) Strand=Plus/Plus Query 16457 CGAGATAACATCCAAGGAATCACCAAGCCAGCTATCCGTCGTCTGGCTCGTCGTGGTGGA 16516 || ||||||||||| || ||||||||||| || |||||||| ||||| || ||||| || Sbjct 409 CGCGATAACATCCAGGGCATCACCAAGCCCGCCATCCGTCGCCTGGCCCGCCGTGGCGGT 468 Query 16517 GTCAAGCGTGTCTCTGGATTGGTCTATGAAGAGATTCGTGATGTTTTGAAGATCTTCCTC 16576 |||||||| || || || |||| || |||| || | || | ||| | ||||| Sbjct 469 GTCAAGCGCATCAGCGGCCTGATCTACGAGGAGACCCGCGGCGTGCTCAAGGTGTTCCTG 528 Query 16577 AAGACCGT 16584 ||| ||| Sbjct 529 GAGAACGT 536 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 79074858049182