Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_006820.1 Length=196280 Score E Sequences producing significant alignments: (Bits) Value seq243 652 0.0 seq260 576 2e-159 >seq243 Length=18593 Score = 652 bits (722), Expect = 0.0 Identities = 719/955 (75%), Gaps = 2/955 (0%) Strand=Plus/Minus Query 135374 TTCTGCGAGTGGGTTACCAGCACCGACAACCGCCTCTATGTGGGTTGGTTTGGAACGCTG 135433 || || |||||||| || ||||| || |||||| | ||||| ||||||||||| || Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 135434 ATGATTCCTACTCTTCTCGCAGCTGCTATCTGCTTT-ATTGTTGCTTTCATCGCTGCACC 135492 ||||| ||||| | | |||| ||| ||| ||| ||| | ||||| |||||||| || Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTA-CTGTTTTTATTATCGCTTTTATCGCTGCTCC 3728 Query 135493 TCCCGTCGATATTGACGGCATCCGCGAACCTGTTGCTGGTTCTCTAATGTACGGAAATAA 135552 || || |||||||| || || |||||||| || | ||||| || | || |||||||| Sbjct 3727 GCCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAA 3668 Query 135553 CATCATCTCTGGTGCTGTTATCCCTTCTAGCAACGCCATCGGCCTTCACTTCTATCCCAT 135612 ||| || ||||| ||||| | || || ||||| || || | || || || || || Sbjct 3667 CATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAAT 3608 Query 135613 CTGGGAAGCTGCTTCTCTTGATGAGTGGCTATATAATGGTGGTCCTTATCAACTAGTGGT 135672 ||||||||||||||||||||| || ||| ||||||||||||| ||||| ||||| | || Sbjct 3607 CTGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGT 3548 Query 135673 CTTCCACTTCCTTATCGGTGTCTTCTCTTACATGGGTCGCGAGTGGGAACTCTCTTACCG 135732 | ||||| | | || | | || ||||||||||| || |||||| | |||| ||| Sbjct 3547 ATGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCG 3488 Query 135733 ACTGGGTATGCGCCCTTGGATTTGTGTCGCTTACTCAGCCCCTGTTGCCGCTGCTACTGC 135792 | |||||||| || ||||| || ||||| ||||| |||||||| || |||||||| Sbjct 3487 TTTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGC 3428 Query 135793 TGTTTTCCTGGTCTACCCCTTTGGACAAGGTTCTTTCAGTGATGGTATGCCGCTTGGCAT 135852 ||| ||| | | || || ||||||||||||| ||| |||||||||||| | || || Sbjct 3427 TGTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTAT 3368 Query 135853 TTCTGGAACTTTTAACTACATGCTTGTTTTCCAGGCAGAACACAACATTCTCATGCATCC 135912 |||||| ||||| || | ||| | || ||||| |||||||| |||||| | ||||| || Sbjct 3367 TTCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCC 3308 Query 135913 TTTCCACATGTTGGGAGTTGCTGGGGTCTTCGGTGGTTCTCTGTTCTCTGCTATGCATGG 135972 ||||| ||| | || |||||||| || || |||||||| | || ||||| |||||||| Sbjct 3307 ATTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGG 3248 Query 135973 ATCTCTTGTCACCTCTAGTCTTGTACGTGAGACGACTGAGGTAGAATCCCAGAACTATGG 136032 || | || || ||| | | | ||||| || ||||| ||||| ||| ||| Sbjct 3247 TTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGG 3188 Query 136033 TTACAAGTTCGGTCAAGAAGAAGAGACTTACAACATTGTTGCTGCTCATGGTTACTTCGG 136092 |||||| ||||| ||| ||||||| ||||||||||| || ||||||||||| || ||||| Sbjct 3187 TTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGG 3128 Query 136093 TCGTCTGATCTTCCAATATGCGTCGTTCAACAACTCTCGTTCGCTACACTTTTTCCTTGC 136152 |||| | || |||||||| || || || || ||||||||||| ||||||| ||| | || Sbjct 3127 TCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGC 3068 Query 136153 TGCTTGGCCTGTTGTCGGTATCTGGTTTGCTGCCCTGGGCGTATCTACGATGGCGTTCAA 136212 ||||||||| ||||| ||||| |||||| |||| | || | || || ||||| || || Sbjct 3067 TGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAA 3008 Query 136213 CCTCAATGGATTCAACTTCAACCAGTCCATTGTATCTTCTGAAGGTCGTGTACTCAACAC 136272 | | ||||| |||||||| ||||| || | || ||| |||||||||| | ||||| Sbjct 3007 CTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACAC 2948 Query 136273 CTGGGCAGATGTGCTGAATCGTGCTGGTCTGGGTATGGAGGTGATGCACGAGCGT 136327 ||||| ||| | | || |||||| ||| |||||||| || ||||| || ||| Sbjct 2947 TTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGT 2893 >seq260 Length=66046 Score = 576 bits (638), Expect = 2e-159 Identities = 745/1026 (73%), Gaps = 2/1026 (0%) Strand=Plus/Minus Query 137859 GGATGGTTCGATGTCTTGGATGACTGGATTAAACGAGATCGCTTTGTATTTGTGGGTTGG 137918 || ||||| ||| || | ||||||||| || || ||||| ||||||||| | || ||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 137919 TCTGGACTACTACTTTTTCCCACTGCTTATTTGGCCCTTGGTGGCTGGCTTACTGGCACA 137978 || || ||| || | || || ||||| ||||| || | ||||| ||| | ||||| ||| Sbjct 57597 TCAGGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACA 57538 Query 137979 ACGTTTGTTACAAGCTGGTACACCCACGGGTTGGCGTCTAGTTATCTTGAAGGCGCTAAT 138038 || ||||| | ||||| || || || || || || |||| | || || || Sbjct 57537 ACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAAC 57478 Query 138039 TTCCTCACAGCAGCTGTTTCGACTCCTGCTGATGCTATGGGTCATTCTCTTCTTCTACTT 138098 || | || | |||||||| || || ||| || |||||| |||||| || || | || Sbjct 57477 TTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTTT 57419 Query 138099 -TGGGGTCCTGAGTCTCAAGGAGATATCGTCCGCTGGTTCCAACTTGGGGGACTCTGGAC 138157 |||||||| || ||||||| ||| | || |||| ||||||||| || || ||||| Sbjct 57418 ATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGAC 57359 Query 138158 TTTTGTGGCGCTCCACGGGGCCTTTAGTCTGATTGGATTCATGCTTCGCCAGTTTGAGAT 138217 ||||| || || ||||| || ||| | | |||||||| |||||||| || || || || Sbjct 57358 ATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAAT 57299 Query 138218 CTCTCGTCTGGTAGGCATCCGTCCCTACAACGCAATCGCATTCTCTGGTCCCATCGCTGT 138277 | | ||| || || || || || |||||||| ||||| |||| || || || || Sbjct 57298 CGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGT 57239 Query 138278 GTTCGTCAGCGTGTTCCTGATGTATCCTTTGGGTCAATCCAGTTGGTTCTTTGCTCCCTC 138337 || || || || | || || || || |||||||| |||||||| ||||| || Sbjct 57238 TTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAG 57179 Query 138338 CTTTGGTGTGGCAGCAATCTTCCGATTCCTGTTGTTCCTTCAGGGTTTCCATAACTGGAC 138397 |||||||| ||||| || ||||| || | || ||| | || |||||||| |||||||| Sbjct 57178 TTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGAC 57119 Query 138398 CCTCAACCCCTTTCATATGATGGGCGTAGCAGGTATTCTTGGTGGTGCTCTGCTCTGTGC 138457 | || || |||||||||||||| || || ||| |||| || | ||| || || ||||| Sbjct 57118 TTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGC 57059 Query 138458 TATTCATGGTGCTACAGTAGAAAATACTTTGTATGAAGATGGCGAACAATCAAATACTTT 138517 |||||||| || ||||||||||||||| | | |||||||||||| |||| || || Sbjct 57058 AATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACATT 56999 Query 138518 TAAAGCATTTGAACCTACTCAAGAAGAAGAAACCTATTCAATGGTTACTGCTAACCGTTA 138577 | || ||| | || ||||||| ||||||||| ||||| | || || || || || | Sbjct 56998 TCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCTT 56939 Query 138578 CTGGTCGCAAATCTTTGGAATTGCTTTTAGTAATAAGCGTTGGCTTCACTTCTTTATGCT 138637 ||||| ||||| || || | || ||| |||||| |||||| | || ||||||||| | Sbjct 56938 TTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGTT 56879 Query 138638 CTTTGTTCCCGTCATGGGTCTCTGGACTAGTAGTATTGGTATTATTGGTCTTGCTCTTAA 138697 ||||| || || | ||| | ||||||||| | ||||| | | || | || | || Sbjct 56878 ATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAAA 56819 Query 138698 CCTACGAGCGTATGATTTCGTATCGCAAGAAATTCGTGCAGCAGAAGATCCTGAATTCGA 138757 |||| || | |||||||| || |||||||||||||| || ||||| || ||||| || Sbjct 56818 TTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTGA 56759 Query 138758 GACCTTCTACACCAAGAACATTCTTCTGAATGAAGGTCTGCGTGCCTGGATGGCTCCTGT 138817 || || || || || || |||||| ||||||||||| | ||||| ||||||||| || Sbjct 56758 AACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTCA 56699 Query 138818 GGATCAACCTCACGAAAACTTTGTTTTTCCTGAAGAAGTATTGCCAAGAGGCAACGCTCT 138877 ||||| ||||| ||||| || || || || || || || || ||| | || |||||||| Sbjct 56698 AGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTCT 56639 Query 138878 GTGATA 138883 | ||| Sbjct 56638 TTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 627965064249600