Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_006883.2
Length=252401
Score E
Sequences producing significant alignments: (Bits) Value
seq243 720 0.0
>seq243
Length=18593
Score = 720 bits (798), Expect = 0.0
Identities = 750/984 (76%), Gaps = 0/984 (0%)
Strand=Plus/Minus
Query 211570 TTCTGCGACTGGGTAACATCAACAAACAACAGAATCTATGTTGGTTGGTTTGGTGTTCTT 211629
|| || || ||||||||| || | ||| | | ||||||||||||||||||||||||
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 211630 ATGATCCCATGTCTTCTAGCTGCAACAACATGCTTTATCGTAGCATTCATCGCAGCACCT 211689
|||||||| | || | ||||| || ||||| | || || ||||| || ||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 211690 CCCGTTGATATCGACGGAATCCGTGAACCAGTAGCTGGTTCATTCATGTATGGTAACAAC 211749
|| || ||||| || || || || ||||||||| | |||||||| | ||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 211750 ATCATCTCTGGTGCAGTTGTTCCATCTTCAAACGCAATCGGTTTACACTTCTATCCTATC 211809
|| || ||||| || || || ||| ||||||||||||| |||||||| || || || |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 211810 TGGGAAGCAGCAACTCTTGATGAGTGGCTCTACAATGGTGGTCCTTACCAGTTGGTAATC 211869
|||||||| || ||||||| || ||| | || |||||||| |||||||| | | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 211870 TTCCACTTCCTTATCGGAATCTCAGCATACATGGGAAGACAGTGGGAACTTTCATACCGT 211929
| ||||| | | ||||| | |||||||||| | | |||||| | || | ||||
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 211930 TTAGGTATGCGTCCTTGGATCTGTGTTGCTTATTCAGCACCTGTATCAGCAGCTTTCGCT 211989
|||||||||||||| |||||| |||||||||||||||||||| | |||||| |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 211990 GTATTCCTTGTTTACCCATTCGGTCAGGGTTCATTCTCAGACGGTATGCCTTTAGGTATA 212049
|||||| || |||| ||| | || || ||||||||||| || |||||||| ||||||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 212050 TCAGGAACATTCAACTTCATGTTCGTATTCCAAGCAGAACATAACATCCTTATGCACCCA 212109
|| || || ||||| || ||| ||||||||||||||||||||||||| | |||||||||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 212110 TTCCATATGGCAGGTGTTGCAGGTATGTTCGGTGGAGCATTATTCTCTGCTATGCACGGT 212169
||||||||| |||||||| ||| | || ||||| ||||||| ||||| ||||| |||
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTCTGCAATGCATGGT 3247
Query 212170 TCTCTTGTTACATCTTCACTTATCCGTGAAACCACTGGTTTAGATTCACAGAACTATGGT 212229
|| | || || ||||| | || |||||||| |||| || || ||| ||||
Sbjct 3246 TCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTGGT 3187
Query 212230 TACAAGTTCGGACAAGAAGAAGAGACATATAACATCGTTGCTGCACATGGATACTTCGGT 212289
||||| ||||||||| ||||||| || || |||||||| ||||| |||||||| ||||||
Sbjct 3186 TACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCGGT 3127
Query 212290 AGACTTATCTTCCAGTATGCATCATTCAACAACAGCAGAAGTTTACACTTCTTCCTCGCA 212349
| | || ||||| || ||||| || || ||| | ||||||||||||| | ||
Sbjct 3126 CGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAGCT 3067
Query 212350 TCATGGCCTGTTATCTGTGTATGGTTAACCTCTATGGGTATCTGCACAATGGCATTCAAC 212409
| ||||| ||| | || | ||||| || || | ||||| | || |||||||| |||
Sbjct 3066 GCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTAAC 3007
Query 212410 CTAAATGGATTCAACTTCAACCAATCAGTTGTTGATGCATCAGGTAAGGTTGTTCCTACT 212469
||||||| |||||||| ||||||||||| |||||| || |||| ||| || |||
Sbjct 3006 TTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACACT 2947
Query 212470 TGGGGTGATGTTCTTAACAGAGCAAACCTTGGTATGGAAGTTATGCACGAAAGAAATGCA 212529
|||| |||| || ||||| | || || |||||||||||||||||||| ||| | ||||||
Sbjct 2946 TGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATGCA 2887
Query 212530 CACAACTTCCCACTTGACTTAGCA 212553
||||| |||||||| || ||||||
Sbjct 2886 CACAATTTCCCACTAGATTTAGCA 2863
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 807551424679440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |