Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_006884.2
Length=178249
Score E
Sequences producing significant alignments: (Bits) Value
seq243 691 0.0
seq260 441 8e-119
>seq243
Length=18593
Score = 691 bits (766), Expect = 0.0
Identities = 746/986 (76%), Gaps = 4/986 (0%)
Strand=Plus/Minus
Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725
|||||||||||||||||| |||||| || ||| | || ||||||||||||||||| |
Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787
Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785
|||||||| | |||| || || || ||| ||| | || || |||||||||||
Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727
Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845
||||| ||||| || || || | |||||||| | ||||| || ||||||| || |||
Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667
Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905
|| || ||||| |||||||| ||| ||||||||||||| || ||||| || || || |||
Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607
Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965
|||||||| || || | ||||| ||||| || || || || |||||||| | | |
Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547
Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025
| ||||| | | ||||| | | | ||||||||| | | |||||| |||| | | |
Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487
Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085
|||| ||| | || ||||| || || || ||||||||||| ||||||| |||
Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427
Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145
|||||| || | |||||| | || || |||||||||||||||||||||||| |||||||
Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367
Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205
|| ||||| ||||| || ||| |||| |||||||||||||| ||||| ||||||||||
Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307
Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT--AGTCTCTTCAGTGCAATGCACG 171263
||||||||| ||||| || ||| | || |||||| | | | ||| ||||||||| |
Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTC--TGCAATGCATG 3249
Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323
|||| |||| || |||||| |||| | || |||||||| ||||| | ||| |
Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189
Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383
| || || ||||||||| |||||||||| || ||||| || |||||||||||||| ||||
Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129
Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443
|| | ||||| ||||| || ||||| || || ||||||||||| |||||||||||| | |
Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069
Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503
||| | || || || || | ||||| || || | ||||| | || |||||||| |
Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009
Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563
|| | || || |||||||| ||||||||||| || ||| || | || || | |
Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949
Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623
| |||| ||| || ||||| | || || ||||| |||||||||||||||||| | ||||
Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889
Query 171624 CACACAACTTCCCACTAGACCTAGCA 171649
||||||| ||||||||||| |||||
Sbjct 2888 CACACAATTTCCCACTAGATTTAGCA 2863
>seq260
Length=66046
Score = 441 bits (488), Expect = 8e-119
Identities = 722/1041 (69%), Gaps = 21/1041 (2%)
Strand=Plus/Minus
Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851
|||||||| | ||||||| ||| | | |||||||| ||||| || || |||||
Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595
Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911
||||| ||| | || ||| ||| || ||||| | || |||||||| ||||| ||
Sbjct 57594 GGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAACA 57535
Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971
|| || | || ||||| || ||||| | || | || ||| | ||||| ||||||
Sbjct 57534 TTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTTT 57475
Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031
||||||| || || || ||||| | | || |||||| ||| | |||| || |||||
Sbjct 57474 TTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTATGG 57415
Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091
|| || || || ||||| ||| || || |||| ||| | || || || |||| |||
Sbjct 57414 GGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACATTT 57355
Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151
|| ||| |||| || | ||| | || || || |||||| | || || || || |||
Sbjct 57354 GTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCGCA 57295
Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211
| ||| || || || || |||||| | ||||| || ||| ||||||||| ||
Sbjct 57294 CGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTTTT 57235
Query 172212 ACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTT 172271
| ||| |||| || ||||||||||| ||||||||| || ||||| |||
Sbjct 57234 GTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTTTT 57175
Query 172272 GGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTT 172331
||||| ||||| || || |||| |||||||||| | || ||||||||||| ||| |
Sbjct 57174 GGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTTTG 57115
Query 172332 AATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATA 172391
||||| ||||||||||||||||| || ||| | || || | || | || ||||| ||
Sbjct 57114 AATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAATT 57055
Query 172392 CATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAG 172451
||||| ||||||||| | || || | | |||||| || | | |
Sbjct 57054 CATGGCGCAACAGTAGAAAATACTCTATTTGAAGA---------------TG--GCGACG 57012
Query 172452 ATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATG 172511
| ||| ||| |||| | || || |||| || || | ||||||||||||| | |
Sbjct 57011 GTGCAA---ACACATTTC-GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTT 56956
Query 172512 ATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTC 172571
| || || || | || |||||||| ||||| ||| |||| ||||| || ||| | |
Sbjct 56955 GTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGG 56896
Query 172572 TTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATC 172631
||||| ||| ||||||| || ||||| || | ||| | ||||| || | ||| |
Sbjct 56895 TTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTA 56836
Query 172632 GTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 172691
||||| | ||| | || | | |||| ||| || || || ||||| || | || ||
Sbjct 56835 GTAGGCTTAGCATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCT 56776
Query 172692 GAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGA 172751
||||||||||| |||||||| || || || || || |||||| | ||||||||||| |
Sbjct 56775 GAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGT 56716
Query 172752 GCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 172811
|| |||||| | || ||||| || ||||| || || || |||||||| || || ||
Sbjct 56715 GCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTA 56656
Query 172812 CCACGAGGCAACGCACTATAA 172832
||||| || ||||| || |||
Sbjct 56655 CCACGTGGAAACGCTCTTTAA 56635
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 570266133993360
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