Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_006884.2 Length=178249 Score E Sequences producing significant alignments: (Bits) Value seq243 691 0.0 seq260 441 8e-119 >seq243 Length=18593 Score = 691 bits (766), Expect = 0.0 Identities = 746/986 (76%), Gaps = 4/986 (0%) Strand=Plus/Minus Query 170666 TTTTGTGAGTGGGTAACATCCACTGACAATCGCATCTACGTTGGTTGGTTTGGTGTCTTA 170725 |||||||||||||||||| |||||| || ||| | || ||||||||||||||||| | Sbjct 3846 TTTTGTGAGTGGGTAACAAGCACTGAAAACCGCTTATATGTTGGTTGGTTTGGTGTTCTT 3787 Query 170726 ATGATCCCATGTCTTCTAACTGCTGCTGCTTGTTTCATTGTAGCATTCATCGCTGCTCCT 170785 |||||||| | |||| || || || ||| ||| | || || ||||||||||| Sbjct 3786 ATGATCCCTACATTATTAACAGCAACTACTGTTTTTATTATCGCTTTTATCGCTGCTCCG 3727 Query 170786 CCAGTCGATATCGACGGAATCAGAGAACCAGTTGCGGGTTCTTTCTTATATGGTAACAAC 170845 ||||| ||||| || || || | |||||||| | ||||| || ||||||| || ||| Sbjct 3726 CCAGTAGATATTGATGGTATTCGCGAACCAGTATCAGGTTCATTACTATATGGAAATAAC 3667 Query 170846 ATCATCTCTGGTGCTGTAGTTCCATCTTCAAACGCAATAGGATTACACTTCTATCCCATC 170905 || || ||||| |||||||| ||| ||||||||||||| || ||||| || || || ||| Sbjct 3666 ATAATTTCTGGCGCTGTAGTACCAACTTCAAACGCAATTGGTTTACATTTTTACCCAATC 3607 Query 170906 TGGGAAGCAGCCACTATGGACGAGTGGTTGTACAACGGAGGTCCTTACCAGTTAGTTATT 170965 |||||||| || || | ||||| ||||| || || || || |||||||| | | | Sbjct 3606 TGGGAAGCTGCTTCTCTTGACGAATGGTTATATAATGGTGGACCTTACCAACTTATCGTA 3547 Query 170966 TTCCACTTCCTTATTGGAATCTCTGCCTACATGGGTAGACAGTGGGAACTATCATACAGA 171025 | ||||| | | ||||| | | | ||||||||| | | |||||| |||| | | | Sbjct 3546 TGTCACTTTTTCTTAGGAATTTGTTCATACATGGGTCGTGAATGGGAATTATCTTTCCGT 3487 Query 171026 CTAGGAATGAGACCTTGGATATGTGTAGCATACTCAGCACCTGTATCTGCAGCATTTGCA 171085 |||| ||| | || ||||| || || || ||||||||||| ||||||| ||| Sbjct 3486 TTAGGTATGCGTCCGTGGATCGCAGTTGCTTATTCAGCACCTGTTGCTGCAGCTACTGCT 3427 Query 171086 GTATTCCTTGTGTATCCATTCGGTCAGGGTTCATTCTCTGATGGTATGCCACTAGGTATC 171145 |||||| || | |||||| | || || |||||||||||||||||||||||| ||||||| Sbjct 3426 GTATTCATTATTTATCCAATTGGACAAGGTTCATTCTCTGATGGTATGCCATTAGGTATT 3367 Query 171146 TCAGGTACGTTCAACTTCATGTTCGTGTTCCAAGCAGAACACAACATACTAATGCACCCC 171205 || ||||| ||||| || ||| |||| |||||||||||||| ||||| |||||||||| Sbjct 3366 TCTGGTACTTTCAATTTTATGATCGTATTCCAAGCAGAACATAACATTTTAATGCACCCA 3307 Query 171206 TTCCATATGGCAGGTGTAGCAGGTATGTTCGGTGGT--AGTCTCTTCAGTGCAATGCACG 171263 ||||||||| ||||| || ||| | || |||||| | | | ||| ||||||||| | Sbjct 3306 TTCCATATGCTTGGTGTTGCTGGTGTATTTGGTGGTTCATTATTTTC--TGCAATGCATG 3249 Query 171264 GTTCTCTAGTGACATCTTCTCTAATCAGAGAGACAACTGAGAACGAGAGTCAAAACTACG 171323 |||| |||| || |||||| |||| | || |||||||| ||||| | ||| | Sbjct 3248 GTTCATTAGTAACTTCTTCTTTAATTCGTGAAACAACTGAAAACGAATCTGCTAACGTTG 3189 Query 171324 GCTATAAGTTCGGACAAGAAGAAGAAACATATAACATTGTTGCTGCTCATGGATACTTCG 171383 | || || ||||||||| |||||||||| || ||||| || |||||||||||||| |||| Sbjct 3188 GTTACAAATTCGGACAACAAGAAGAAACTTACAACATCGTAGCTGCTCATGGATATTTCG 3129 Query 171384 GTAGATTAATCTTCCAGTATGCATCATTCAACAACTCTCGTTCATTACACTTCTTCCTCG 171443 || | ||||| ||||| || ||||| || || ||||||||||| |||||||||||| | | Sbjct 3128 GTCGTTTAATTTTCCAATACGCATCTTTTAATAACTCTCGTTCTTTACACTTCTTCTTAG 3069 Query 171444 CTGTATTCCCTGTAGTCTGTGTATGGTTAACCTCTATGGGTATCTGTACAATGGCATTCA 171503 ||| | || || || || | ||||| || || | ||||| | || |||||||| | Sbjct 3068 CTGCTTGGCCAGTTGTTGGTATTTGGTTTACTGCTTTAGGTATTTCAACTATGGCATTTA 3009 Query 171504 ACCTTAACGGATTCAACTTCAACCAATCAGTTGTAGATGCAAACGGAAAGATTGTACCAA 171563 || | || || |||||||| ||||||||||| || ||| || | || || | | Sbjct 3008 ACTTAAATGGTTTCAACTTTAACCAATCAGTAGTTGATTCACAAGGTCGTGTTATTAACA 2949 Query 171564 CATGGGGAGATGTTCTTAACAGAGCAAACCTTGGAATGGAAGTTATGCATGAAAGAAATG 171623 | |||| ||| || ||||| | || || ||||| |||||||||||||||||| | |||| Sbjct 2948 CTTGGGCTGATATTATTAACCGTGCTAATCTTGGTATGGAAGTTATGCATGAACGTAATG 2889 Query 171624 CACACAACTTCCCACTAGACCTAGCA 171649 ||||||| ||||||||||| ||||| Sbjct 2888 CACACAATTTCCCACTAGATTTAGCA 2863 >seq260 Length=66046 Score = 441 bits (488), Expect = 8e-119 Identities = 722/1041 (69%), Gaps = 21/1041 (2%) Strand=Plus/Minus Query 171792 TGGTTTGACGTTCTTGATGATTGGTTAAAGAGAGATCGTTTCGTATTCATCGGATGGTCT 171851 |||||||| | ||||||| ||| | | |||||||| ||||| || || ||||| Sbjct 57654 TGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGGTCA 57595 Query 171852 GGTCTTTTACTTTTACCTTGTGCTTACCTAGCAATCGGAGGTTGGTTCGTAGGAACTACT 171911 ||||| ||| | || ||| ||| || ||||| | || |||||||| ||||| || Sbjct 57594 GGTCTATTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAACAACA 57535 Query 171912 TTCGTGACCTCATGGTACACACATGGTATTGCATCCTCATATCTTGAGGGAGCAAACTTT 171971 || || | || ||||| || ||||| | || | || ||| | ||||| |||||| Sbjct 57534 TTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAACTTT 57475 Query 171972 TTAACTGCAGCAGTATCAACACCTGGTGATGCTATGGGTCATAGTCTATTGTTCCTATGG 172031 ||||||| || || || ||||| | | || |||||| ||| | |||| || ||||| Sbjct 57474 TTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCTTTATTATTTTTATGG 57415 Query 172032 GGACCTGAGGCACAAGGAGATCTTGTACGATGGTTTCAATTAGGTGGACTATGGAACTTT 172091 || || || || ||||| ||| || || |||| ||| | || || || |||| ||| Sbjct 57414 GGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGACATTT 57355 Query 172092 GTAGCATTACATGGAGTCTTTGGACTCATAGGTTTCATGCTTAGACAGTTTGAGATTGCA 172151 || ||| |||| || | ||| | || || || |||||| | || || || || ||| Sbjct 57354 GTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAATCGCA 57295 Query 172152 GGACTTGTTGGGATACGTCCTTACAACGCACTAGCATTCTCAGCAGTTATTGCAGTATTC 172211 | ||| || || || || |||||| | ||||| || ||| ||||||||| || Sbjct 57294 CGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAGTTTTT 57235 Query 172212 ACGAGCATCTTTCTAATATATCCATTAGGTCAGCATAGTTGGTTCTTCGCACCTTCATTT 172271 | ||| |||| || ||||||||||| ||||||||| || ||||| ||| Sbjct 57234 GTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGAGTTTT 57175 Query 172272 GGTGTCGCAGCAATCTTTCGTTATATTTTATTCATACAGGGTTTCCACAATATAACTCTT 172331 ||||| ||||| || || |||| |||||||||| | || ||||||||||| ||| | Sbjct 57174 GGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGACTTTG 57115 Query 172332 AATCCATTTCATATGATGGGTGTAGCAGGTATACTTGGTGGAGCATTACTATGTGCCATA 172391 ||||| ||||||||||||||||| || ||| | || || | || | || ||||| || Sbjct 57114 AATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTGCAATT 57055 Query 172392 CATGGTGCAACAGTACAGAACACATTGTATGAAGACACATCACAATACACTGAAGGTAAG 172451 ||||| ||||||||| | || || | | |||||| || | | | Sbjct 57054 CATGGCGCAACAGTAGAAAATACTCTATTTGAAGA---------------TG--GCGACG 57012 Query 172452 ATTCAATCTACAACTTTCAGAGCATTCGATCCTACACAGGAAGAAGAAACTTATAGTATG 172511 | ||| ||| |||| | || || |||| || || | ||||||||||||| | | Sbjct 57011 GTGCAA---ACACATTTC-GTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTT 56956 Query 172512 ATTACTGCTAACAGATTCTGGTCACAGATATTTGGTATAGCATTTTCAAACAAAAGATTC 172571 | || || || | || |||||||| ||||| ||| |||| ||||| || ||| | | Sbjct 56955 GTAACAGCAAATCGCTTTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGG 56896 Query 172572 TTACACTTCCTTATGTTGTTCGTACCTGTCATGGGTATGTGGACATCATCTATAGGTATC 172631 ||||| ||| ||||||| || ||||| || | ||| | ||||| || | ||| | Sbjct 56895 TTACATTTCTTTATGTTATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTA 56836 Query 172632 GTAGGTCTTGCACTTAACCTCAGAGCATACGACTTTGTATCTCAAGAGATAAGAGCAGCA 172691 ||||| | ||| | || | | |||| ||| || || || ||||| || | || || Sbjct 56835 GTAGGCTTAGCATTAAATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCT 56776 Query 172692 GAAGACCCAGAGTTTGAAACCTTCTACACTAAGAACATTCTTCTTAATGAAGGTATGAGA 172751 ||||||||||| |||||||| || || || || || |||||| | ||||||||||| | Sbjct 56775 GAAGACCCAGAATTTGAAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGT 56716 Query 172752 GCATGGATGTCATCTGTCGATCAACCCCATGAGAACTTTGTGTTCCCAGAAGAAGTCTTG 172811 || |||||| | || ||||| || ||||| || || || |||||||| || || || Sbjct 56715 GCTTGGATGGCTGCTCAAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTA 56656 Query 172812 CCACGAGGCAACGCACTATAA 172832 ||||| || ||||| || ||| Sbjct 56655 CCACGTGGAAACGCTCTTTAA 56635 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570266133993360