Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_007346.1
Length=407339
Score E
Sequences producing significant alignments: (Bits) Value
seq43 105 2e-17
>seq43
Length=247289
Score = 105 bits (116), Expect = 2e-17
Identities = 253/381 (66%), Gaps = 5/381 (1%)
Strand=Plus/Minus
Query 364777 CAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGG 364836
|||||||| || ||||||||||||||||| |||| || ||||| | || |||||
Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293
Query 364837 GTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGC 364896
|| || ||||| || || |||| || || || |||| | | || || || ||
Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233
Query 364897 GGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAAC 364956
|| ||||||| | | |||||||||| | | | || | || || || ||||||
Sbjct 175232 GGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAG--- 175176
Query 364957 ATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCAT 365015
|| ||| | || || | || ||| | | ||||| || || ||||| ||
Sbjct 175175 -GGCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGCA 175117
Query 365016 GCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTT 365075
||| || || | || ||||| || |||||||| || | ||| |||| |||||| ||
Sbjct 175116 GCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCTT 175057
Query 365076 TAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTG 365135
||||| |||| | | || | || | |||||| || ||| | || ||||||| ||
Sbjct 175056 CAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCTG 174997
Query 365136 GAAATCCGGTCTTAAGACAGG 365156
||| || || ||||| ||
Sbjct 174996 GAAGAAGGGGCTGAAGACGGG 174976
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1303347354492468
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |