Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_007346.1 Length=407339 Score E Sequences producing significant alignments: (Bits) Value seq43 105 2e-17 >seq43 Length=247289 Score = 105 bits (116), Expect = 2e-17 Identities = 253/381 (66%), Gaps = 5/381 (1%) Strand=Plus/Minus Query 364777 CAGATCCTCGGAAACAACGAGTGCTTCGAACCGTTTACAAGCAATCTTTATTCACGCCGG 364836 |||||||| || ||||||||||||||||| |||| || ||||| | || ||||| Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293 Query 364837 GTTCTTTCCGGAGAATTTCCGGTAGTTAATAAGTACCTAGTCAAGGATCTTTCCGACCGC 364896 || || ||||| || || |||| || || || |||| | | || || || || Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233 Query 364897 GGGCTGTGGGGTGACAGCATGAAGAACTATATCATCGCCGCTAATGGTTCTGTGCAGAAC 364956 || ||||||| | | |||||||||| | | | || | || || || |||||| Sbjct 175232 GGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAG--- 175176 Query 364957 ATTCCAGGA-TTTCCAGAAGATCTGAAGCCTATTTACAAAACCGTATGGGAAATTTCCAT 365015 || ||| | || || | || ||| | | ||||| || || ||||| || Sbjct 175175 -GGCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGCA 175117 Query 365016 GCGAACTCTCATTGATATGGCGGCCGATCGCGGTGCTTTTATCTGTCAGAGCCAGTCGTT 365075 ||| || || | || ||||| || |||||||| || | ||| |||| |||||| || Sbjct 175116 GCGCACGCTGGTGGACATGGCCGCGGATCGCGGCGCGTACATCGATCAGTCCCAGTCCTT 175057 Query 365076 TAACGTATTCATGACTCAGCCAACCTCCGCCAAGCTTACATCCATGCATTTCTACGGGTG 365135 ||||| |||| | | || | || | |||||| || ||| | || ||||||| || Sbjct 175056 CAACGTGCACATGTCGGACCCCAACTTTGGCAAGCTCACCTCCCTCCACTTCTACGCCTG 174997 Query 365136 GAAATCCGGTCTTAAGACAGG 365156 ||| || || ||||| || Sbjct 174996 GAAGAAGGGGCTGAAGACGGG 174976 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1303347354492468