Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq133 143 3e-29 seq99 127 2e-24 seq149 98.7 9e-16 seq90 89.7 5e-13 seq43 86.0 6e-12 >seq133 Length=726431 Score = 143 bits (158), Expect = 3e-29 Identities = 169/229 (74%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 170690 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170749 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||||||||| ||||| Sbjct 170750 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 170809 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | || |||| |||||| | Sbjct 170810 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCAC 170869 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATG 131235 |||| |||| ||| || || || || || || ||||| ||||||||| Sbjct 170870 TTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918 Score = 109 bits (120), Expect = 5e-19 Identities = 105/135 (78%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 ||| ||||||| |||||||| | || | ||| |||||||| || |||||||| ||| Sbjct 170918 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170977 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || |||||| |||||| ||||||||||| || |||| | ||||| |||||||| || Sbjct 170978 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGG 171037 Query 131127 GATTCCTTCTTTGTC 131141 ||| || || ||||| Sbjct 171038 GATGCCCTCCTTGTC 171052 >seq99 Length=333813 Score = 127 bits (140), Expect = 2e-24 Identities = 164/221 (74%), Gaps = 8/221 (4%) Strand=Plus/Plus Query 46099 AAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGT 46158 ||||| ||||||||||| ||||||||||| ||| ||| |||| ||||||||||| Sbjct 93200 AAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGC-GCAGAGCGA--TTCGCCGAGCGC 93256 Query 46159 ATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTT 46218 |||| |||||||| ||||||||| | || || || ||| || | |||||| Sbjct 93257 CTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCTTCTGCTCCATCTAC 93316 Query 46219 TACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCG 46277 | | || || | |||| ||||||| || ||||| || ||||||||| || || || Sbjct 93317 TGGGTGAAGAAGCGGGGGC-TCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCG 93375 Query 46278 CGACGAGGGCCTGCATACGGACTTTGCGTG---TCTCTACT 46315 ||| ||||||||||| || |||||||| || |||||||| Sbjct 93376 CGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTCTACT 93416 >seq149 Length=203194 Score = 98.7 bits (108), Expect = 9e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| |||| ||||| || | || | ||| |||||||| || |||||||| ||| | Sbjct 6849 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6908 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | |||||| ||||| ||||||||||| || |||| | ||||| |||||||| ||| Sbjct 6909 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 6968 Query 131128 ATTCCTTCTTTGTC 131141 ||||| || || || Sbjct 6969 ATTCCCTCCTTATC 6982 >seq90 Length=671320 Score = 89.7 bits (98), Expect = 5e-13 Identities = 145/206 (70%), Gaps = 7/206 (3%) Strand=Plus/Plus Query 46108 GACTGGGCGATGAAGTGGATCAACAGCAGCACCGCGACTTTCGCCGAGCGTATGGTGGCC 46167 || ||||| | | ||||||| |||| | || | ||||| |||| |||||||| Sbjct 288307 GAGTGGGCCCTCAGGTGGATCGGCAGCGGGTCC---AGCTTCGCGCAGCGGCTGGTGGCC 288363 Query 46168 TTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCATCTTTTACATCAAA 46227 ||||| ||||||||| || | || || ||| ||| ||||||| | |||| Sbjct 288364 TTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTACTGGCTCAAG 288423 Query 46228 ACCAAGGGCA--TCATGCCCGGCCTGACGTTTAGCAACGAGCTGATATCGCGCGACGAGG 46285 | | |||| ||||||||||||| || || |||||||| || || || || |||| Sbjct 288424 A--AGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCGTGATGAGG 288481 Query 46286 GCCTGCATACGGACTTTGCGTGTCTC 46311 ||||||| || |||||||| || ||| Sbjct 288482 GCCTGCACACCGACTTTGCCTGCCTC 288507 >seq43 Length=247289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 83/107 (78%), Gaps = 0/107 (0%) Strand=Plus/Plus Query 145687 GCACAAATTGCTACATTTGATGGTTCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGC 145746 ||||| ||||| | |||||||| ||||| || ||||| || || || |||||||| Sbjct 176630 GCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCACGA 176689 Query 145747 GTCCTTGTAGAGCATGTACGGTCCGCCAGTCTCCACCTGCGTCTCCA 145793 ||||||||| |||||| | || || ||||||||||||| ||||| Sbjct 176690 GTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGCCTCCA 176736 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472010593340160