Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_008035.3 Length=126629 Score E Sequences producing significant alignments: (Bits) Value seq133 129 5e-25 seq149 89.7 4e-13 >seq133 Length=726431 Score = 129 bits (142), Expect = 5e-25 Identities = 167/229 (73%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||| | Sbjct 170691 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170750 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| ||| | || || ||||| ||||| ||| Sbjct 170751 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 170810 Query 16829 ACGCCCTCTTTGTC--GGCAATTTGCTGCTTCACCTGGCCCACAGTGTCGCCGGGCTCCG 16886 | |||||| ||||| || || || |||||| | | | | |||||| || |||| Sbjct 170811 ATGCCCTCCTTGTCCTGGATCTTGGC--CTTCACATTGTCAATGGTGTCGGAGGACTCCA 170868 Query 16887 TTTCCACGGTGATGGTTTTTCCGGTCAGCGTTTTGACAAAAATCTGCAT 16935 ||| | || ||||| || || |||||||| ||||| || |||||||| Sbjct 170869 CTTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 Score = 98.7 bits (108), Expect = 8e-16 Identities = 102/134 (76%), Gaps = 0/134 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| ||||| ||||||||||| || ||||||||||||| | Sbjct 170919 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170978 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCCACAGGC 16828 | ||| | ||||||| | || ||||| ||| | || || |||||||||||| || Sbjct 170979 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGG 171038 Query 16829 ACGCCCTCTTTGTC 16842 | |||||| ||||| Sbjct 171039 ATGCCCTCCTTGTC 171052 >seq149 Length=203194 Score = 89.7 bits (98), Expect = 4e-13 Identities = 88/114 (77%), Gaps = 0/114 (0%) Strand=Plus/Plus Query 16709 CCTCCTCGTAGCCTCAGTACCATATGCAGCGTGGACTCCTTTTGTATGTTGTAGTCGGCC 16768 || || || || | ||| |||| || || ||||||||||| || ||||||||||||| | Sbjct 6849 CCACCACGCAGGCGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 6908 Query 16769 ATGGTTTTGGCGTCCTCCAATTGTTTGCCCGCATAAATAAGCCGCTGTTGGTCC 16822 | ||| | | ||||||| || ||||||||| | || || |||||||||||| Sbjct 6909 AGGGTGCGGCCATCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCC 6962 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 405086153558260