Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_008296.2 Length=177300 Score E Sequences producing significant alignments: (Bits) Value seq243 646 1e-180 seq260 553 2e-152 >seq243 Length=18593 Score = 646 bits (716), Expect = 1e-180 Identities = 716/952 (75%), Gaps = 2/952 (0%) Strand=Plus/Minus Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140 ||||| | ||||||||||||||||| || ||||| || || | || ||||||| Sbjct 3819 AACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGCAACT 3760 Query 166141 ATCTGTTTC-ATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199 | |||||| || ||||||| | || || || || || ||||| ||||| || || || Sbjct 3759 A-CTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGA 3701 Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259 || ||| |||| || || | ||||| || ||||| || ||||| ||||| || || | Sbjct 3700 ACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACCAAC 3641 Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319 || |||||||||||| | || || || || ||||||||||| || || ||||| ||||| Sbjct 3640 TTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATG 3581 Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379 | | ||||| ||||| |||| ||| || | || | ||||| || | || || | | | Sbjct 3580 GTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTC 3521 Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439 ||||||||||||||||||||||| |||| ||| | ||||||||||| ||||| || Sbjct 3520 ATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGT 3461 Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499 || || || ||||||||||| ||||| | || || ||| | | ||||| | || || Sbjct 3460 TGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGGACA 3401 Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559 |||||| |||||||| | ||||| | ||||| ||| || ||||| | ||| | || Sbjct 3400 AGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGATCGT 3341 Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619 ||||||||||| || ||||| | |||||||| ||||||||||| ||||| || ||||| Sbjct 3340 ATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTGT 3281 Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679 ||| ||||| ||| | || || |||||||| || | || ||||| || | | || Sbjct 3280 ATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTCG 3221 Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739 ||| || ||||||| || ||| ||| ||||||||| || || ||| ||||||| || Sbjct 3220 TGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAAC 3161 Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799 ||||||||||| ||||||||||| || |||||||| | || ||||||||||| || || Sbjct 3160 TTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATCTTT 3101 Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859 || |||||||| || | ||||||||| | || || ||||| ||||| ||||| ||||| Sbjct 3100 TAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTT 3041 Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919 ||||||| | ||| || || |||||||| ||| | || ||||||||||| ||||| || Sbjct 3040 TACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCAATC 2981 Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979 | | ||| || |||||||| | ||||||||||| ||| | | ||||||||| Sbjct 2980 AGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAA 2921 Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 167031 ||| ||||||||||| ||||| || |||||||| ||||| ||||| || ||| Sbjct 2920 TCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGAT 2869 >seq260 Length=66046 Score = 553 bits (612), Expect = 2e-152 Identities = 742/1027 (72%), Gaps = 4/1027 (0%) Strand=Plus/Minus Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353 || ||||||||| || | |||||||||||| || || || ||||| ||| | |||||| Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598 Query 167354 TCTGGATTACTTCTTTTTCCC-ACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCAC 167412 || || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| || Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539 Query 167413 GACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAA 167472 || ||||| | |||||||| || || || || || ||| | |||||| || Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479 Query 167473 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 167532 ||| | || | || || || || || ||| | |||||| |||||| || || | | Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420 Query 167533 T-TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGG 167591 | |||||||| || |||| || ||||| | | |||||||| ||||| || || ||| Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360 Query 167592 CTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGA 167651 | ||||| || || ||||| || ||| || | || |||||||||||||| ||||| || | Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300 Query 167652 TAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTG 167711 | | ||| || || || || || || ||||| ||||||| || ||||| | Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240 Query 167712 TCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGT 167771 | ||||| |||| ||| | || || || | || || || |||||||| ||||||||| Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180 Query 167772 CGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGA 167831 |||||||||||||| || || | || | ||||| | || |||||||| ||||||| Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120 Query 167832 CGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTG 167891 | | || ||||| ||||||||||| ||||||||| | ||||| | ||| | |||| || Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060 Query 167892 CAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTT 167951 |||| ||||| | |||||||| |||||||| | ||||||||| || |||||||| | Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000 Query 167952 TCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGAT 168011 | || ||| || | ||||| | ||| ||||||||||| | || || || || || | Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940 Query 168012 TCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGC 168071 | ||||| ||||| || ||| | || || ||||| |||||||| || ||||||||| Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880 Query 168072 TTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTA 168131 | || || || || | || | ||||| ||| || ||||| | | || | ||| | | Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820 Query 168132 ATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTG 168191 || | ||||| | || || || || || ||| || | || || || || ||||| |||| Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760 Query 168192 AAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAG 168251 ||||||| ||||| ||||| || || | |||||||| | ||||| ||||||||| | Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700 Query 168252 TAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTC 168311 ||| || || |||||||| || ||||||||||| || || || ||| | || ||||||| Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640 Query 168312 TGTGATA 168318 | | ||| Sbjct 56639 TTTAATA 56633 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 567229348190400