Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_008296.2
Length=177300
Score E
Sequences producing significant alignments: (Bits) Value
seq243 646 1e-180
seq260 553 2e-152
>seq243
Length=18593
Score = 646 bits (716), Expect = 1e-180
Identities = 716/952 (75%), Gaps = 2/952 (0%)
Strand=Plus/Minus
Query 166081 AACCGTCTTTATGTTGGTTGGTTTGGCACACTGATGATTCCAACTCTGTTGGCAGCAACC 166140
||||| | ||||||||||||||||| || ||||| || || | || |||||||
Sbjct 3819 AACCGCTTATATGTTGGTTGGTTTGGTGTTCTTATGATCCCTACATTATTAACAGCAACT 3760
Query 166141 ATCTGTTTC-ATCGTCGCTTTCGTAGCGGCACCTCCTGTCGATATCGATGGGATCCGTGA 166199
| |||||| || ||||||| | || || || || || ||||| ||||| || || ||
Sbjct 3759 A-CTGTTTTTATTATCGCTTTTATCGCTGCTCCGCCAGTAGATATTGATGGTATTCGCGA 3701
Query 166200 GCCCGTAGCAGGCTCTCTAATGTATGGTAACAACATCATCTCTGGTGCTGTTGTCCCCTC 166259
|| ||| |||| || || | ||||| || ||||| || ||||| ||||| || || |
Sbjct 3700 ACCAGTATCAGGTTCATTACTATATGGAAATAACATAATTTCTGGCGCTGTAGTACCAAC 3641
Query 166260 CTCCAACGCAATTGGTCTTCACTTCTATCCCATCTGGGAAGCAGCATCACTTGATGAATG 166319
|| |||||||||||| | || || || || ||||||||||| || || ||||| |||||
Sbjct 3640 TTCAAACGCAATTGGTTTACATTTTTACCCAATCTGGGAAGCTGCTTCTCTTGACGAATG 3581
Query 166320 GCTTTATAACGGTGGTCCTTTCCAGCTCGTAGTCTTCCACTTCCTCATCGGCATCTATGC 166379
| | ||||| ||||| |||| ||| || | || | ||||| || | || || | | |
Sbjct 3580 GTTATATAATGGTGGACCTTACCAACTTATCGTATGTCACTTTTTCTTAGGAATTTGTTC 3521
Query 166380 CTACATGGGTCGTGAATGGGAATTGTCTTACCGCCTCGGTATGCGTCCTTGGATTTGCGT 166439
||||||||||||||||||||||| |||| ||| | ||||||||||| ||||| ||
Sbjct 3520 ATACATGGGTCGTGAATGGGAATTATCTTTCCGTTTAGGTATGCGTCCGTGGATCGCAGT 3461
Query 166440 AGCATACTCTGCACCTGTTGCAGCAGCATCCGCAGTCTTCCTGGTCTATCCTTTCGGTCA 166499
|| || || ||||||||||| ||||| | || || ||| | | ||||| | || ||
Sbjct 3460 TGCTTATTCAGCACCTGTTGCTGCAGCTACTGCTGTATTCATTATTTATCCAATTGGACA 3401
Query 166500 AGGTTCTTTCTCTGACGCAATGCCCCTGGGTATCAGTGGCACCTTCAACTACATGCTTGT 166559
|||||| |||||||| | ||||| | ||||| ||| || ||||| | ||| | ||
Sbjct 3400 AGGTTCATTCTCTGATGGTATGCCATTAGGTATTTCTGGTACTTTCAATTTTATGATCGT 3341
Query 166560 CTTCCAAGCAGAGCACAACATCCTCATGCACCCCTTCCATATGCTGGGTGTAGCAGGTGT 166619
||||||||||| || ||||| | |||||||| ||||||||||| ||||| || |||||
Sbjct 3340 ATTCCAAGCAGAACATAACATTTTAATGCACCCATTCCATATGCTTGGTGTTGCTGGTGT 3281
Query 166620 ATTCGGTGGGTCACTTTTCTCGGCAATGCACGGCAGTCTCGTTACTTCCTCGCTCGTCCG 166679
||| ||||| ||| | || || |||||||| || | || ||||| || | | ||
Sbjct 3280 ATTTGGTGGTTCATTATTTTCTGCAATGCATGGTTCATTAGTAACTTCTTCTTTAATTCG 3221
Query 166680 TGAGACCACTGAAACTGAGTCTCAAAACTATGGTTACAAGTTTGGTCAAGAAGAAGAGAC 166739
||| || ||||||| || ||| ||| ||||||||| || || ||| ||||||| ||
Sbjct 3220 TGAAACAACTGAAAACGAATCTGCTAACGTTGGTTACAAATTCGGACAACAAGAAGAAAC 3161
Query 166740 CTACAACATCGTGGCTGCTCATGGTTACTTCGGTCGCCTGATCTTCCAATACGCTTCCTT 166799
||||||||||| ||||||||||| || |||||||| | || ||||||||||| || ||
Sbjct 3160 TTACAACATCGTAGCTGCTCATGGATATTTCGGTCGTTTAATTTTCCAATACGCATCTTT 3101
Query 166800 CAACAACTCTCGCTCGCTGCACTTCTTCCTCGCAGCATGGCCTGTTGTCGGTATCTGGTT 166859
|| |||||||| || | ||||||||| | || || ||||| ||||| ||||| |||||
Sbjct 3100 TAATAACTCTCGTTCTTTACACTTCTTCTTAGCTGCTTGGCCAGTTGTTGGTATTTGGTT 3041
Query 166860 TACTGCTCTTGGTGTTAGCACCATGGCATTCAACCTCAACGGTTTCAACTTCAACCAGTC 166919
||||||| | ||| || || |||||||| ||| | || ||||||||||| ||||| ||
Sbjct 3040 TACTGCTTTAGGTATTTCAACTATGGCATTTAACTTAAATGGTTTCAACTTTAACCAATC 2981
Query 166920 CATCATCGATGGTCAGGGTCGTGTGCTCAACACTTGGGCAGATGTCCTCAACCGTGCTGG 166979
| | ||| || |||||||| | ||||||||||| ||| | | |||||||||
Sbjct 2980 AGTAGTTGATTCACAAGGTCGTGTTATTAACACTTGGGCTGATATTATTAACCGTGCTAA 2921
Query 166980 TCTGGGTATGGAAGTAATGCACGAGCGTAATGCTCACAACTTCCCTCTGGAT 167031
||| ||||||||||| ||||| || |||||||| ||||| ||||| || |||
Sbjct 2920 TCTTGGTATGGAAGTTATGCATGAACGTAATGCACACAATTTCCCACTAGAT 2869
>seq260
Length=66046
Score = 553 bits (612), Expect = 2e-152
Identities = 742/1027 (72%), Gaps = 4/1027 (0%)
Strand=Plus/Minus
Query 167294 GGGTGGTTTGATGTCCTGGATGACTGGCTTAAACGCGACCGCTTTGTCTTTGTGGGCTGG 167353
|| ||||||||| || | |||||||||||| || || || ||||| ||| | ||||||
Sbjct 57657 GGTTGGTTTGATATCGTTGATGACTGGCTTCGTCGTGATCGTTTTGTATTTATTGGCTGG 57598
Query 167354 TCTGGATTACTTCTTTTTCCC-ACTGCTTATCTGGCAATTGGTGGCTGGCTTACTGGCAC 167412
|| || || || || ||||| ||||| ||| | ||| | ||||| ||| | ||||| ||
Sbjct 57597 TCAGGTCTA-TTATTATTCCCTACTGCATATTTAGCATTAGGTGGTTGGTTAACTGGAAC 57539
Query 167413 GACGTTTGTTACGAGCTGGTATACCCACGGGTTGGCGTCTAGTTACCTTGAGGGTGCTAA 167472
|| ||||| | |||||||| || || || || || ||| | |||||| ||
Sbjct 57538 AACATTTGTAAGTTCTTGGTATACTCATGGCTTAGCTACTTCTTATTTAGAGGGTTGCAA 57479
Query 167473 TTTTCTCACGGCAGCAGTGTCAACTCCTGCTGACGCTATGGGTCATTCTCTTCTTCTACT 167532
||| | || | || || || || || ||| | |||||| |||||| || || | |
Sbjct 57478 CTTTTTAACTGTTGCTGTTTCTACACCCGCTAATAGTATGGGGCATTCT-TTATTATTTT 57420
Query 167533 T-TGGGGTCCTGAGTCTCAGGGGGATTTCATCAGGTGGTGCCAGCTTGGGGGACTCTGGG 167591
| |||||||| || |||| || ||||| | | |||||||| ||||| || || |||
Sbjct 57419 TATGGGGTCCCGAAGCTCAAGGTGATTTTACTCGTTGGTGCCAACTTGGAGGTCTTTGGA 57360
Query 167592 CTTTTGTGGCGCTCCACGGAGCCTTTGCTCTCATAGGATTTATGCTTCGGCAATTTGAGA 167651
| ||||| || || ||||| || ||| || | || |||||||||||||| ||||| || |
Sbjct 57359 CATTTGTTGCACTACACGGTGCTTTTTCTTTAATTGGATTTATGCTTCGTCAATTCGAAA 57300
Query 167652 TAAGTAGACTAGTAGGTATCCGTCCTTACAATGCGATTGCTTTTTCTGGTCCGATTGCTG 167711
| | ||| || || || || || || ||||| ||||||| || ||||| |
Sbjct 57299 TCGCACGTTCAGTTAAAATTCGCCCATATAACGCAATTGCATTTTCTGCACCTATTGCAG 57240
Query 167712 TCTTTGTGTCTGTTTTTCTCATCTATCCTCTCGGACAGTCCAGTTGGTTCTTTGCACCGT 167771
| ||||| |||| ||| | || || || | || || || |||||||| |||||||||
Sbjct 57239 TTTTTGTTGCTGTATTTTTAATTTACCCATTAGGTCAATCTAGTTGGTTTTTTGCACCGA 57180
Query 167772 CGTTTGGTGTTGCAGCGATATTTAGATTCCTACTATTCCTACAGGGTTTCCATAACTGGA 167831
|||||||||||||| || || | || | ||||| | || |||||||| |||||||
Sbjct 57179 GTTTTGGTGTTGCAGCTATTTTCCGTTTTATTTTATTCTTCCAAGGTTTCCACAACTGGA 57120
Query 167832 CGCTCAACCCTTTCCATATGATGGGAGTTGCTGGTATCCTAGGCGGTGCATTGCTTTCTG 167891
| | || ||||| ||||||||||| ||||||||| | ||||| | ||| | |||| ||
Sbjct 57119 CTTTGAATCCTTTTCATATGATGGGTGTTGCTGGTGTTCTAGGAGCTGCGCTTCTTTGTG 57060
Query 167892 CAATCCATGGTGTTACAGTAGAGAATACTCTGTATGAAGATGGTGAGCAAGCAAACACTT 167951
|||| ||||| | |||||||| |||||||| | ||||||||| || |||||||| |
Sbjct 57059 CAATTCATGGCGCAACAGTAGAAAATACTCTATTTGAAGATGGCGACGGTGCAAACACAT 57000
Query 167952 TCAAAGCATTTGATACGACTCAGGAAGAGGAAACTTATTCCATGGTCACTGCTAACCGAT 168011
| || ||| || | ||||| | ||| ||||||||||| | || || || || || |
Sbjct 56999 TTCGTGCGTTTAATCCAACTCAAGCAGAAGAAACTTATTCTTTTGTAACAGCAAATCGCT 56940
Query 168012 TCTGGTCTCAAATTTTTGGTATTGCTTTCAGCAATAAGCGTTGGTTGCACTTCTTTATGC 168071
| ||||| ||||| || ||| | || || ||||| |||||||| || |||||||||
Sbjct 56939 TTTGGTCACAAATATTCGGTGTAGCGTTTTCTAATAAACGTTGGTTACATTTCTTTATGT 56880
Query 168072 TTTTCGTTCCTGTCATGGGACTTTGGACAAGTTCTATTGGTATCATCGGTCTCGCACTTA 168131
| || || || || | || | ||||| ||| || ||||| | | || | ||| | |
Sbjct 56879 TATTTGTACCAGTAACTGGTTTATGGACTAGTGCTTTTGGTGTAGTAGGCTTAGCATTAA 56820
Query 168132 ATCTTCGTGCTTATGACTTTGTGTCTCAGGAAGTTAGAGCAGCAGAGGATCCAGAGTTTG 168191
|| | ||||| | || || || || || ||| || | || || || || ||||| ||||
Sbjct 56819 ATTTACGTGCATCCGATTTCGTTTCACAAGAAATTCGTGCTGCTGAAGACCCAGAATTTG 56760
Query 168192 AAACTTTCTATACGAAAAACATCCTCCTCAATGAAGGACTCCGTGCCTGGATGGCTCCAG 168251
||||||| ||||| ||||| || || | |||||||| | ||||| ||||||||| |
Sbjct 56759 AAACTTTTTATACAAAAAATATTCTTTTGAATGAAGGTATTCGTGCTTGGATGGCTGCTC 56700
Query 168252 TAGACCAACCACATGAAAACTTTGTATTCCCAGAAGAAGTATTGCCAAGAGGCAACGCTC 168311
||| || || |||||||| || ||||||||||| || || || ||| | || |||||||
Sbjct 56699 AAGATCAGCCTCATGAAAAATTAGTATTCCCAGAGGAGGTTTTACCACGTGGAAACGCTC 56640
Query 168312 TGTGATA 168318
| | |||
Sbjct 56639 TTTAATA 56633
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 567229348190400
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