Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_008586.1
Length=131204
Score E
Sequences producing significant alignments: (Bits) Value
seq133 122 7e-23
>seq133
Length=726431
Score = 122 bits (134), Expect = 7e-23
Identities = 163/227 (72%), Gaps = 0/227 (0%)
Strand=Plus/Minus
Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278
||||| || || || || || | || || || || | || || |||||||| || ||
Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858
Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338
|| ||| | ||| || | || || || || ||||||||||| || || ||||| ||
Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798
Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398
|| || || || ||||||||||| ||| | ||||| ||||||| | ||||| ||||||
Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738
Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTTTTGCGATTGCGCGGAGG 22445
|| || || || |||||| | || | || |||| ||||||| ||
Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGG 170691
Score = 100 bits (110), Expect = 2e-16
Identities = 108/143 (76%), Gaps = 0/143 (0%)
Strand=Plus/Minus
Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362
|| || || ||||||||||| || || || || ||||| || || || |||||||||||
Sbjct 171061 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTGCCGGCAAG 171002
Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCACCATACAT 22422
||| | ||||| ||||||| | ||||| |||||||| || || || |||||| | ||
Sbjct 171001 CAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAC 170942
Query 22423 TTAGTTTTGCGATTGCGCGGAGG 22445
| || |||| ||||||| ||
Sbjct 170941 CTGGTGCTGCGCCTGCGCGGCGG 170919
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 419726086827310
| Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |