Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq184 107 4e-18 seq90 105 1e-17 seq203 96.9 7e-15 >seq184 Length=163332 Score = 107 bits (118), Expect = 4e-18 Identities = 78/89 (88%), Gaps = 1/89 (1%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 24077 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24136 Query 142564 CCCACATCGGGCAGAAGTCGCCGTCTTTT 142592 ||||| |||||| | |||| | |||||| Sbjct 24137 CCCACTTCGGGCGGCTGTCGTC-TCTTTT 24164 >seq90 Length=671320 Score = 105 bits (116), Expect = 1e-17 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||| |||||||||||||||||||| || ||||||| || ||||||||||||||||| Sbjct 203566 AGCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAG 203625 Query 142563 CCCCACATCGGGC 142575 |||||| |||||| Sbjct 203626 CCCCACTTCGGGC 203638 Score = 104 bits (114), Expect = 5e-17 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 142504 GCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAGC 142563 |||||| |||||||||||||||||||| || ||||||| || |||||||||||||||||| Sbjct 384956 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 385015 Query 142564 CCCACATCGGGC 142575 ||||| |||||| Sbjct 385016 CCCACTTCGGGC 385027 >seq203 Length=214014 Score = 96.9 bits (106), Expect = 7e-15 Identities = 89/113 (79%), Gaps = 0/113 (0%) Strand=Plus/Minus Query 218531 AGGAGCTCATTCTTTTCTCGCGGTATGATGTGGAGCGTTCTATTCCCAGCGTGGTGGATG 218590 |||||||||| || ||||| || ||| ||||||| || || ||| || ||||||||| Sbjct 136093 AGGAGCTCATCCTCTTCTCCAGGGCTGACCTGGAGCGCTCCATCCCCTGCATGGTGGATG 136034 Query 218591 GCCTCAAGCCATCGCAGCGTAAGATCCTCTTTGCCGCATTCAAGCGGAACCTG 218643 |||||||||| ||||| |||||||||| ||| |||||||| |||||| Sbjct 136033 GCCTCAAGCCCGGCCAGCGCAAGATCCTCTACGCCTGCTTCAAGCGTAACCTG 135981 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027831874734534