Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_008724.1
Length=288047
Score E
Sequences producing significant alignments: (Bits) Value
seq133 167 4e-36
seq287 154 3e-32
seq99 132 9e-26
seq184 116 7e-21
seq90 116 7e-21
>seq133
Length=726431
Score = 167 bits (184), Expect = 4e-36
Identities = 173/227 (76%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294
|| ||||| ||||||| |||| ||| || |||||||| || |||||||| || |||||
Sbjct 170691 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170750
Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354
|| || | || || || | |||||| ||||| || || || | || |||||||| ||
Sbjct 170751 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 170810
Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414
||||| |||||||| || ||||| ||||| || || |||||||| | || || |||
Sbjct 170811 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACT 170870
Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461
|| | || ||||| || ||||| || ||||||||||| ||||||||
Sbjct 170871 TCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
>seq287
Length=210851
Score = 154 bits (170), Expect = 3e-32
Identities = 169/222 (76%), Gaps = 2/222 (1%)
Strand=Plus/Plus
Query 172962 AGGTGGTGGTGCTCGACAAGATGGACTACTGCGCGACCCTGAACAACCTGGCAACAGTTC 173021
||||||| || || |||||| | |||||||||||||| ||| | ||| || | | |
Sbjct 113890 AGGTGGTTGTCCTGGACAAGCTCGACTACTGCGCGACGCTGGAGAACTTGAAGTCCATCC 113949
Query 173022 GAGA-TGCTCCCAATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCG 173080
| || ||| ||||| ||||||||||| |||||||| || || || || || || | | |
Sbjct 113950 GGGACTGC-CCCAACTTCAAGTTCGTGAAGGGAGAGATCCAGTCCACGGACCTGATCGTG 114008
Query 173081 CACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTG 173140
||| | ||| || || | || ||||| | ||||||||||| || ||||||||||||
Sbjct 114009 CACATTCTGGAGACCGAGGAGATCGACACCGTCATGCACTTTGCCGCCCAGACCCATGTG 114068
Query 173141 GACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAAC 173182
|||||||| ||||| ||| ||||| || ||||||||||||
Sbjct 114069 GACAACTCCTTCGGGAACAGCCTGGCGTTCACCATGAACAAC 114110
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Plus
Query 173441 CAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTC 173500
|||||||| || || |||||||| || || ||||| | || |||||| | | ||
Sbjct 114633 CAGTTCCCGGAGAAGATGATCCCCAAGTTCATTCTGAGGGCTCAGCGTGGCGAGAAACTG 114692
Query 173501 CCCATCCACGGGGACGGCGGGGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAG 173560
||||||||||| |||||| | | ||||||| || |||| || || ||||| || |||
Sbjct 114693 CCCATCCACGGCGACGGCATGTCGGTGCGGTCCTACCTGTACGTGGAGGACGTCGCGGAG 114752
Query 173561 GCTTACATTACTATTTTGCTCAAGGGCA 173588
|| ||||| | | |||| |||||||
Sbjct 114753 GCCTACATCATCGTCATGCTGAAGGGCA 114780
>seq99
Length=333813
Score = 132 bits (146), Expect = 9e-26
Identities = 214/303 (71%), Gaps = 6/303 (2%)
Strand=Plus/Minus
Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312
||| |||||||| |||||| ||||| ||||||||| || ||| || |||||||||||
Sbjct 93391 GTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGCCC 93332
Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372
||| || || |||| | |||| |||||| || |||||||| | | |||||||||||
Sbjct 93331 CCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATATGCCCTCCACGCA 93272
Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAA-GGAGCGGTCGCGCGAAAAGTATTTCGAGGCCC 10431
| ||||||| |||||||| ||||| | | | ||| ||| | | ||| ||||
Sbjct 93271 GGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTG-CGCTCGAGATCCACTTCAGCGCCC 93213
Query 10432 ACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGCT 10491
| | |||||||| || | || | ||||||| | || | ||| ||| ||| | |
Sbjct 93212 AGTCGGCCTTCTTCTTGACCACTGGTACCGTCTCGGTGGCGTGGAACAGCATGT--CCTT 93155
Query 10492 CGGTCTC--GTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCT 10549
| | | | ||||| || ||||| || |||||| ||| ||||||||||| | |
Sbjct 93154 CTGCCGCGGGTCCTTGATGTACGCATCCAGCAGCAGGCTGTACATCTCGCTGTGGATGTT 93095
Query 10550 CTC 10552
|||
Sbjct 93094 CTC 93092
>seq184
Length=163332
Score = 116 bits (128), Expect = 7e-21
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 24077 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24136
Query 84516 CCCACATCGGGC 84527
||||| ||||||
Sbjct 24137 CCCACTTCGGGC 24148
>seq90
Length=671320
Score = 116 bits (128), Expect = 7e-21
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 203567 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 203626
Query 84516 CCCACATCGGGC 84527
||||| ||||||
Sbjct 203627 CCCACTTCGGGC 203638
Score = 116 bits (128), Expect = 7e-21
Identities = 69/72 (96%), Gaps = 0/72 (0%)
Strand=Plus/Plus
Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515
|||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 384956 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 385015
Query 84516 CCCACATCGGGC 84527
||||| ||||||
Sbjct 385016 CCCACTTCGGGC 385027
Score = 87.8 bits (96), Expect = 3e-12
Identities = 108/148 (73%), Gaps = 0/148 (0%)
Strand=Plus/Minus
Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312
||| |||||||| || ||| ||||| |||||| || || || |||||||||||
Sbjct 288489 GTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCCGGGCATGAGGTG 288430
Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372
||| || |||||| | ||||| || || || |||||||| || | |||||||||||
Sbjct 288429 CCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGATGCCCTCCACGCA 288370
Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAG 10400
| |||| || || |||| ||||||
Sbjct 288369 GGCAAAGGCCACCAGCCGCTGCGCGAAG 288342
Score = 84.2 bits (92), Expect = 4e-11
Identities = 131/183 (72%), Gaps = 7/183 (4%)
Strand=Plus/Minus
Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682
|||||||| | ||| || || ||| | | ||||||||| |||| |||| |||||||
Sbjct 287480 AGGTTCTCGAGCACGATACCGTCGGAGGCCGCAAAGAAGGCGAGAATGTAGGAGATGAAG 287421
Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTG--AGCTGGA 10740
|||||||| || ||| |||| | ||| ||| || || ||| || | || | |
Sbjct 287420 TGGCGCTCGTCGTCGGTCAG--TCGCAC-CCAATC--CCGCATGTCGGCGGATAGGTCCA 287366
Query 10741 CCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGT 10800
|||||||||| |||||| | |||| ||||| |||||| | || | | ||||||| ||
Sbjct 287365 CCTCCTCCACAGTCCAGTAGCTGGCTTGGGCCTGCTTGTAGAACTCGTAGATGTCGGTGT 287306
Query 10801 ACC 10803
||
Sbjct 287305 GCC 287303
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 921618091415280
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |