Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq133 167 4e-36 seq287 154 3e-32 seq99 132 9e-26 seq184 116 7e-21 seq90 116 7e-21 >seq133 Length=726431 Score = 167 bits (184), Expect = 4e-36 Identities = 173/227 (76%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || ||||| ||||||| |||| ||| || |||||||| || |||||||| || ||||| Sbjct 170691 CCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGAC 170750 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| ||||| || || || | || |||||||| || Sbjct 170751 AGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGG 170810 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| |||||||| || ||||| ||||| || || |||||||| | || || ||| Sbjct 170811 ATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACT 170870 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || ||||| || ||||| || ||||||||||| |||||||| Sbjct 170871 TCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917 >seq287 Length=210851 Score = 154 bits (170), Expect = 3e-32 Identities = 169/222 (76%), Gaps = 2/222 (1%) Strand=Plus/Plus Query 172962 AGGTGGTGGTGCTCGACAAGATGGACTACTGCGCGACCCTGAACAACCTGGCAACAGTTC 173021 ||||||| || || |||||| | |||||||||||||| ||| | ||| || | | | Sbjct 113890 AGGTGGTTGTCCTGGACAAGCTCGACTACTGCGCGACGCTGGAGAACTTGAAGTCCATCC 113949 Query 173022 GAGA-TGCTCCCAATTTCAAGTTCGTCAAGGGAGATATTCAATCTACTGATCTCCTGGCG 173080 | || ||| ||||| ||||||||||| |||||||| || || || || || || | | | Sbjct 113950 GGGACTGC-CCCAACTTCAAGTTCGTGAAGGGAGAGATCCAGTCCACGGACCTGATCGTG 114008 Query 173081 CACGTCCTGAAGCAGGAAAAAATTGACACGATTATGCACTTTGCTGCGCAGACCCATGTG 173140 ||| | ||| || || | || ||||| | ||||||||||| || |||||||||||| Sbjct 114009 CACATTCTGGAGACCGAGGAGATCGACACCGTCATGCACTTTGCCGCCCAGACCCATGTG 114068 Query 173141 GACAACTCGTTCGGTAACTCGCTGGCATTTACCATGAACAAC 173182 |||||||| ||||| ||| ||||| || |||||||||||| Sbjct 114069 GACAACTCCTTCGGGAACAGCCTGGCGTTCACCATGAACAAC 114110 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Plus Query 173441 CAGTTCCCCGAAAAAATGATCCCAAAATTTATTCTTCGCGCAACCCGTGGCCTGGACCTC 173500 |||||||| || || |||||||| || || ||||| | || |||||| | | || Sbjct 114633 CAGTTCCCGGAGAAGATGATCCCCAAGTTCATTCTGAGGGCTCAGCGTGGCGAGAAACTG 114692 Query 173501 CCCATCCACGGGGACGGCGGGGCTTTGCGGTCGTATTTGTATGTTGATGACGTGGCAGAG 173560 ||||||||||| |||||| | | ||||||| || |||| || || ||||| || ||| Sbjct 114693 CCCATCCACGGCGACGGCATGTCGGTGCGGTCCTACCTGTACGTGGAGGACGTCGCGGAG 114752 Query 173561 GCTTACATTACTATTTTGCTCAAGGGCA 173588 || ||||| | | |||| ||||||| Sbjct 114753 GCCTACATCATCGTCATGCTGAAGGGCA 114780 >seq99 Length=333813 Score = 132 bits (146), Expect = 9e-26 Identities = 214/303 (71%), Gaps = 6/303 (2%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| |||||||| |||||| ||||| ||||||||| || ||| || ||||||||||| Sbjct 93391 GTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCCGGCATGAGCCC 93332 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 ||| || || |||| | |||| |||||| || |||||||| | | ||||||||||| Sbjct 93331 CCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATATGCCCTCCACGCA 93272 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAA-GGAGCGGTCGCGCGAAAAGTATTTCGAGGCCC 10431 | ||||||| |||||||| ||||| | | | ||| ||| | | ||| |||| Sbjct 93271 GGCAAAGGCGACCAGGCGCTCGGCGAATCGCTCTG-CGCTCGAGATCCACTTCAGCGCCC 93213 Query 10432 ACGCTGCCTTCTTTCCCACGGCAGGGATCGTCTCGATAGCCTCGAAGAGCTTGTTACGCT 10491 | | |||||||| || | || | ||||||| | || | ||| ||| ||| | | Sbjct 93212 AGTCGGCCTTCTTCTTGACCACTGGTACCGTCTCGGTGGCGTGGAACAGCATGT--CCTT 93155 Query 10492 CGGTCTC--GTCCTCAATAAGAGCATCAAGGAGCAGGGAGTATTGCTCGCTGTGGACGCT 10549 | | | | ||||| || ||||| || |||||| ||| ||||||||||| | | Sbjct 93154 CTGCCGCGGGTCCTTGATGTACGCATCCAGCAGCAGGCTGTACATCTCGCTGTGGATGTT 93095 Query 10550 CTC 10552 ||| Sbjct 93094 CTC 93092 >seq184 Length=163332 Score = 116 bits (128), Expect = 7e-21 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 24077 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 24136 Query 84516 CCCACATCGGGC 84527 ||||| |||||| Sbjct 24137 CCCACTTCGGGC 24148 >seq90 Length=671320 Score = 116 bits (128), Expect = 7e-21 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 203567 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 203626 Query 84516 CCCACATCGGGC 84527 ||||| |||||| Sbjct 203627 CCCACTTCGGGC 203638 Score = 116 bits (128), Expect = 7e-21 Identities = 69/72 (96%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 84456 GCCCGGTTAGCTCAGTCGGCAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 84515 |||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||| Sbjct 384956 GCCCGGATAGCTCAGTCGGTAGAGCGCAAGGCTCTTAACCTTGTGGTCGTGGGTTCGAGC 385015 Query 84516 CCCACATCGGGC 84527 ||||| |||||| Sbjct 385016 CCCACTTCGGGC 385027 Score = 87.8 bits (96), Expect = 3e-12 Identities = 108/148 (73%), Gaps = 0/148 (0%) Strand=Plus/Minus Query 10253 GTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGACAAACCCAGACCGGGCATGAGCCC 10312 ||| |||||||| || ||| ||||| |||||| || || || ||||||||||| Sbjct 288489 GTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCCGGGCATGAGGTG 288430 Query 10313 CCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCCGGAGAACAGAAGACCCTCCACGCA 10372 ||| || |||||| | ||||| || || || |||||||| || | ||||||||||| Sbjct 288429 CCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGATGCCCTCCACGCA 288370 Query 10373 CACCCAGGCGACGAGGCGCTCTGCGAAG 10400 | |||| || || |||| |||||| Sbjct 288369 GGCAAAGGCCACCAGCCGCTGCGCGAAG 288342 Score = 84.2 bits (92), Expect = 4e-11 Identities = 131/183 (72%), Gaps = 7/183 (4%) Strand=Plus/Minus Query 10623 AGGTTCTCCATCACCATGCCATCGCTGCCTGCAAAGAAGCCGAGGATGTGCTTGATGAAG 10682 |||||||| | ||| || || ||| | | ||||||||| |||| |||| ||||||| Sbjct 287480 AGGTTCTCGAGCACGATACCGTCGGAGGCCGCAAAGAAGGCGAGAATGTAGGAGATGAAG 287421 Query 10683 TGGCGCTCATCATCGTTCAGTTTTTCACGCCAGTCTACCACATCCTGGTTG--AGCTGGA 10740 |||||||| || ||| |||| | ||| ||| || || ||| || | || | | Sbjct 287420 TGGCGCTCGTCGTCGGTCAG--TCGCAC-CCAATC--CCGCATGTCGGCGGATAGGTCCA 287366 Query 10741 CCTCCTCCACGGTCCAGAAAGTGGCAACGGCCTTCTTGTACATCTGGAAAATGTCGGGGT 10800 |||||||||| |||||| | |||| ||||| |||||| | || | | ||||||| || Sbjct 287365 CCTCCTCCACAGTCCAGTAGCTGGCTTGGGCCTGCTTGTAGAACTCGTAGATGTCGGTGT 287306 Query 10801 ACC 10803 || Sbjct 287305 GCC 287303 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921618091415280