Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq99 219 8e-52 seq43 185 2e-41 seq90 147 4e-30 >seq99 Length=333813 Score = 219 bits (242), Expect = 8e-52 Identities = 271/366 (74%), Gaps = 5/366 (1%) Strand=Plus/Plus Query 42502 AGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG 42561 |||| ||| |||||||||||||||||| ||||| |||||| | ||| ||| ||||| Sbjct 93057 AGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACA 93116 Query 42562 CCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAGCGTAACGGGCTGTTCAAGGCC 42620 | ||||| | |||||||| ||| || || | || || ||||||| | ||| Sbjct 93117 GCCTGCTGCTGGATGCGTACATCAAGGACCCGCGGC-AGAAGGACATGCTGTTCCACGCC 93175 Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680 | |||||| | || ||||||||||||| ||||||||||| || |||||| ||| Sbjct 93176 ACCGAGACGGTACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGC 93235 Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740 | || || | |||| |||| | ||||| |||||| || ||| |||||||| |||||| Sbjct 93236 GCAGA-GCGA--TTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTC 93292 Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800 || ||| ||||| |||||||| |||| | ||| || || | ||||| || || ||| Sbjct 93293 TCCGGCTCCTTCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACC 93352 Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTG 42860 ||||| ||||| |||||| | | || ||||| ||||| | |||||||||||||| || Sbjct 93353 TTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTC 93412 Query 42861 TTCTCG 42866 | |||| Sbjct 93413 TACTCG 93418 >seq43 Length=247289 Score = 185 bits (204), Expect = 2e-41 Identities = 245/340 (72%), Gaps = 0/340 (0%) Strand=Plus/Plus Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156 |||| |||| |||| | ||||||||||| | ||| | || | |||||| |||||| Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553 Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216 ||||||||||||||| | | || ||||||||| |||||| | ||||| |||| Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613 Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276 |||| | |||||||||||| |||||||| ||| || | | || |||| ||| Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGC 177673 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 || ||| | ||||| ||| ||| |||||| ||||| ||| | ||||| | Sbjct 177674 TCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGA 177733 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 ||||||| |||||||| | ||||||| | || |||||||||||||||||||| || Sbjct 177734 TGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGG 177793 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436 || ||| | ||||||||| ||||| |||||| || || Sbjct 177794 GGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Score = 134 bits (148), Expect = 3e-26 Identities = 302/447 (68%), Gaps = 19/447 (4%) Strand=Plus/Plus Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794 ||||| |||||| || || || | ||||| ||| | |||||||||||| || |||| Sbjct 174923 CCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCCCGTCT 174982 Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854 | || || | |||||||| || ||| | || || ||||| | ||| | Sbjct 174983 TCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCAAAGTTG------G 175036 Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGC 243913 |||| || ||| | ||||| ||||||| ||| |||| | | | |||| || Sbjct 175037 GGTC-----CG-ACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACG-CGCCGCGA 175089 Query 243914 TCTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972 || ||||||||| | || || | ||| ||||| || |||||||||| | | Sbjct 175090 TCCGCGGCCATGTCCACCAGCGTGCG-CTGCTTGATCTCCCACACCGTCTTGTACAGCGC 175148 Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032 |||||| ||||||| || | | ||||||||| || ||| | | |||| Sbjct 175149 CTTGAGCGCGTCGGGGATG---TCCAGGCCCTGCACCGACCCGTTGCCCGCCACCAGCTC 175205 Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTT 244092 | | ||||| ||| ||||||||||| ||| || | | | ||||||| ||| Sbjct 175206 GTTCTTCATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTT 175265 Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152 ||||||| ||||| || ||||||||||||||| ||||| |||||| || |||||| Sbjct 175266 CACCACCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTC 175325 Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTG 244179 || || ||| |||||||||| ||||| Sbjct 175326 GAAGCACTCGTTGTTGCCCAGGATCTG 175352 Score = 102 bits (112), Expect = 2e-16 Identities = 85/104 (82%), Gaps = 0/104 (0%) Strand=Plus/Plus Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798 ||||| ||||| |||| ||||||||||||||||| ||| || ||| ||||| |||||| Sbjct 176628 GTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCAC 176687 Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842 | ||||||||| ||||||||||| ||| ||||| | ||| || Sbjct 176688 GAGTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGC 176731 >seq90 Length=671320 Score = 147 bits (162), Expect = 4e-30 Identities = 176/238 (74%), Gaps = 6/238 (3%) Strand=Plus/Plus Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703 ||| |||||||| ||||| |||| ||||||| || || | | |||| || | Sbjct 288297 GAAAAAGGCGGAGTGGGCCCTCAGGTGGATCGGCAG---CGGGTCCAGCTTCGCGCAGCG 288353 Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763 |||||| |||||| || ||| ||||||||| ||||||| ||| |||| |||||| Sbjct 288354 GCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTA 288413 Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823 |||||||||| || | |||||||| ||||||||||| ||||| |||||| | | Sbjct 288414 CTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473 Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881 || ||||| ||||| | ||||||||||||||||||| | ||| ||| |||||| Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTCCTGTAC---CGCCGCCTGAGGCAC 288528 Score = 95.1 bits (104), Expect = 2e-14 Identities = 118/159 (74%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAACG 42543 |||||||||| | |||||| || ||| ||||||| |||||| ||||| ||||| | Sbjct 287811 AGAGGTGCAGATCCCTGAGGCCCG-TGCATTCTACGCATTCCAGGCCGCCATCGAGAATG 287869 Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603 ||||| ||| |||| | | ||||| | ||||||||||||| || |||||||| Sbjct 287870 TGCACAGCGAGATGTATGGCCTGCTGCTGGAGTCGTACATCCTGGACCCTGTCGAGCGAG 287929 Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642 |||| || ||| ||||| |||| || |||||| ||| Sbjct 287930 ACGGCCTCTTCCGTGCCATCCAGACCATCCCCTGCGTCA 287968 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944334785214240