Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_009127.1
Length=295146
Score E
Sequences producing significant alignments: (Bits) Value
seq99 219 8e-52
seq43 185 2e-41
seq90 147 4e-30
>seq99
Length=333813
Score = 219 bits (242), Expect = 8e-52
Identities = 271/366 (74%), Gaps = 5/366 (1%)
Strand=Plus/Plus
Query 42502 AGGCGCGCTGCTTCTACGGCTTCCAGATAGCCATAGAGAACGTGCACTCTGAGGTGTACG 42561
|||| ||| |||||||||||||||||| ||||| |||||| | ||| ||| |||||
Sbjct 93057 AGGCCCGCGCCTTCTACGGCTTCCAGATCGCCATCGAGAACATCCACAGCGAGATGTACA 93116
Query 42562 CCAAACTGCTCAACACGTACATCCTGGATCC-CGTCGAGCGTAACGGGCTGTTCAAGGCC 42620
| ||||| | |||||||| ||| || || | || || ||||||| | |||
Sbjct 93117 GCCTGCTGCTGGATGCGTACATCAAGGACCCGCGGC-AGAAGGACATGCTGTTCCACGCC 93175
Query 42621 ATGGAGACGATGCCCTGCATCAAGAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGT 42680
| |||||| | || ||||||||||||| ||||||||||| || |||||| |||
Sbjct 93176 ACCGAGACGGTACCAGTGGTCAAGAAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGC 93235
Query 42681 CCCGACGCAACGTTCGGCGAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTC 42740
| || || | |||| |||| | ||||| |||||| || ||| |||||||| ||||||
Sbjct 93236 GCAGA-GCGA--TTCGCCGAGCGCCTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTC 93292
Query 42741 TCGGGCGCCTTCGCCTCCATCTTCTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACC 42800
|| ||| ||||| |||||||| |||| | ||| || || | ||||| || || |||
Sbjct 93293 TCCGGCTCCTTCTGCTCCATCTACTGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACC 93352
Query 42801 TTCTCGAACGAACTCATCAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTG 42860
||||| ||||| |||||| | | || ||||| ||||| | |||||||||||||| ||
Sbjct 93353 TTCTCCAACGAGCTCATCTCCCGCGATGAGGGCCTGCACACCGACTTTGCCTGCCTTCTC 93412
Query 42861 TTCTCG 42866
| ||||
Sbjct 93413 TACTCG 93418
>seq43
Length=247289
Score = 185 bits (204), Expect = 2e-41
Identities = 245/340 (72%), Gaps = 0/340 (0%)
Strand=Plus/Plus
Query 245097 AGTCAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGT 245156
|||| |||| |||| | ||||||||||| | ||| | || | |||||| ||||||
Sbjct 177494 AGTCGAAGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGC 177553
Query 245157 TGCCTCCCTGGTCCACCATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGC 245216
||||||||||||||| | | || ||||||||| |||||| | ||||| ||||
Sbjct 177554 CGCCTCCCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGC 177613
Query 245217 CGTTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTGAGGTTGCTGATGG 245276
|||| | |||||||||||| |||||||| ||| || | | || |||| |||
Sbjct 177614 CGTTGCTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGC 177673
Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336
|| ||| | ||||| ||| ||| |||||| ||||| ||| | ||||| |
Sbjct 177674 TCAGGCCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGA 177733
Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396
||||||| |||||||| | ||||||| | || |||||||||||||||||||| ||
Sbjct 177734 TGCCCTCGATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGG 177793
Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAA 245436
|| ||| | ||||||||| ||||| |||||| || ||
Sbjct 177794 GGGTGCCGGCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
Score = 134 bits (148), Expect = 3e-26
Identities = 302/447 (68%), Gaps = 19/447 (4%)
Strand=Plus/Plus
Query 243735 CCACGCTGAACTGGACGGGTGCGACGGCGGCCTTGGTCCTCAGGTAGTACATGCCGGTCT 243794
||||| |||||| || || || | ||||| ||| | |||||||||||| || ||||
Sbjct 174923 CCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCCCGTCT 174982
Query 243795 TGAGTCCACTGGACCAGGCGTGGAGGTGCATGGCCGTCAGCTTCTTCATCTTGAGCTTTG 243854
| || || | |||||||| || ||| | || || ||||| | ||| |
Sbjct 174983 TCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCAAAGTTG------G 175036
Query 243855 GGTCGTCCTCGCACAGAAAGAGGTTGAGGGACTGGCTCTGGTCGACGAAGGGCGCC-CGC 243913
|||| || ||| | ||||| ||||||| ||| |||| | | | |||| ||
Sbjct 175037 GGTC-----CG-ACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACG-CGCCGCGA 175089
Query 243914 TCTGCGGCCATGGTGATGAG-GTCCTTCTGAGATATCTCATACGCCGTCTTGTAGATGGG 243972
|| ||||||||| | || || | ||| ||||| || |||||||||| | |
Sbjct 175090 TCCGCGGCCATGTCCACCAGCGTGCG-CTGCTTGATCTCCCACACCGTCTTGTACAGCGC 175148
Query 243973 CTTGAGGTGCTCGGGGAACCCTTCGATGTTCTGCACCGAGCCCTTGTGGACGATGAGCTG 244032
|||||| ||||||| || | | ||||||||| || ||| | | ||||
Sbjct 175149 CTTGAGCGCGTCGGGGATG---TCCAGGCCCTGCACCGACCCGTTGCCCGCCACCAGCTC 175205
Query 244033 GGTGCGCATGTTATCGTTCCACAGGCCCAAGCGCTCCAGCGCCTCGACCAGGTGCCTGTT 244092
| | ||||| ||| ||||||||||| ||| || | | | ||||||| |||
Sbjct 175206 GTTCTTCATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTT 175265
Query 244093 CACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGGCTC 244152
||||||| ||||| || ||||||||||||||| ||||| |||||| || ||||||
Sbjct 175266 CACCACCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTC 175325
Query 244153 GATGCTCTCCGTGTTGCCCAGTATCTG 244179
|| || ||| |||||||||| |||||
Sbjct 175326 GAAGCACTCGTTGTTGCCCAGGATCTG 175352
Score = 102 bits (112), Expect = 2e-16
Identities = 85/104 (82%), Gaps = 0/104 (0%)
Strand=Plus/Plus
Query 244739 GTGCAGAGGTTACTGCACTTGATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAG 244798
||||| ||||| |||| ||||||||||||||||| ||| || ||| ||||| ||||||
Sbjct 176628 GTGCACAGGTTGCTGCTCTTGATGGTGCCCAGGTTCTGCTGGTTGCTCTTGGAGTTGCAC 176687
Query 244799 GCGTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGC 244842
| ||||||||| ||||||||||| ||| ||||| | ||| ||
Sbjct 176688 GAGTCCTTGTACAGCATGAAGGGGTTCCCCGTCTCCACCTGCGC 176731
>seq90
Length=671320
Score = 147 bits (162), Expect = 4e-30
Identities = 176/238 (74%), Gaps = 6/238 (3%)
Strand=Plus/Plus
Query 42644 GAAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGACGCAACGTTCGGCGAGAG 42703
||| |||||||| ||||| |||| ||||||| || || | | |||| || |
Sbjct 288297 GAAAAAGGCGGAGTGGGCCCTCAGGTGGATCGGCAG---CGGGTCCAGCTTCGCGCAGCG 288353
Query 42704 GCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCCATCTT 42763
|||||| |||||| || ||| ||||||||| ||||||| ||| |||| ||||||
Sbjct 288354 GCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTA 288413
Query 42764 CTGGCTCAAGCAGAAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCATCAGCAG 42823
|||||||||| || | |||||||| ||||||||||| ||||| |||||| | |
Sbjct 288414 CTGGCTCAAGAAGCGGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCCCG 288473
Query 42824 GGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAGGCAC 42881
|| ||||| ||||| | ||||||||||||||||||| | ||| ||| ||||||
Sbjct 288474 TGATGAGGGCCTGCACACCGACTTTGCCTGCCTCCTGTAC---CGCCGCCTGAGGCAC 288528
Score = 95.1 bits (104), Expect = 2e-14
Identities = 118/159 (74%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 42485 AGAGGTGCAGTACTTTGAGGCGCGCTGC-TTCTACGGCTTCCAGATAGCCATAGAGAACG 42543
|||||||||| | |||||| || ||| ||||||| |||||| ||||| ||||| |
Sbjct 287811 AGAGGTGCAGATCCCTGAGGCCCG-TGCATTCTACGCATTCCAGGCCGCCATCGAGAATG 287869
Query 42544 TGCACTCTGAGGTGTACGCCAAACTGCTCAACACGTACATCCTGGATCCCGTCGAGCGTA 42603
||||| ||| |||| | | ||||| | ||||||||||||| || ||||||||
Sbjct 287870 TGCACAGCGAGATGTATGGCCTGCTGCTGGAGTCGTACATCCTGGACCCTGTCGAGCGAG 287929
Query 42604 ACGGGCTGTTCAAGGCCATGGAGACGATGCCCTGCATCA 42642
|||| || ||| ||||| |||| || |||||| |||
Sbjct 287930 ACGGCCTCTTCCGTGCCATCCAGACCATCCCCTGCGTCA 287968
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 944334785214240
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