Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_010191.2
Length=186713
Score E
Sequences producing significant alignments: (Bits) Value
seq90 122 1e-22
seq99 116 4e-21
>seq90
Length=671320
Score = 122 bits (134), Expect = 1e-22
Identities = 152/208 (73%), Gaps = 3/208 (1%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || ||||| |||||||||||||| || || |||||| || ||
Sbjct 288501 GGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCC 288442
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
|||||||| ||||||||| | |||| | || |||||||| || || ||||||| |||
Sbjct 288441 GGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGAT 288382
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTGTCAAA 126225
|||||||| || || || || | || |||| || | ||| ||| || | |
Sbjct 288381 GCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC---GAAGCTGGACCCGCTGCCGAT 288325
Query 126226 CCACTTCATCGCCCACTGCGCCTTTTTC 126253
|||| | | ||||||| ||||||||||
Sbjct 288324 CCACCTGAGGGCCCACTCCGCCTTTTTC 288297
>seq99
Length=333813
Score = 116 bits (128), Expect = 4e-21
Identities = 157/215 (73%), Gaps = 9/215 (4%)
Strand=Plus/Minus
Query 126046 GGCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGTCC 126105
|||||| || ||| || ||||| || ||||||||||| || || |||||| ||| ||
Sbjct 93403 GGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCC 93344
Query 126106 TGGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAACCCGAGAAGAAGAT 126165
|||||||| ||||||||||||| |||| | || | || || || || |||||||| ||
Sbjct 93343 CGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATAT 93284
Query 126166 TCCCTCCACACACGCGAACGCAAAGAGACGCTCAGCAAAGGAGCGCGACTTTGTG-TC-- 126222
|||||||| || || || || | || ||||| || | | || || || | ||
Sbjct 93283 GCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGC---GAATCG---CTCTGCGCTCGA 93230
Query 126223 AAACCACTTCATCGCCCACTGCGCCTTTTTCTCGA 126257
| |||||||| |||||| | ||||| |||| ||
Sbjct 93229 GATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGA 93195
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 597350807371920
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |