Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_011183.1
Length=154641
Score E
Sequences producing significant alignments: (Bits) Value
seq43 219 4e-52
>seq43
Length=247289
Score = 219 bits (242), Expect = 4e-52
Identities = 241/321 (75%), Gaps = 0/321 (0%)
Strand=Plus/Minus
Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951
||| | || || ||||||||||| || ||||| || ||| |||| || || |||||
Sbjct 177824 GCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTA 177765
Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011
|| | | ||||||||| |||| || || | ||||| || ||||| || ||| ||
Sbjct 177764 GTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCGGCC 177705
Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071
||||| || | |||||| || ||||| | || | ||| || | ||||||| ||| |||
Sbjct 177704 ATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATCCGTGCCACGGGGTCC 177645
Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131
||||||||||| ||||| ||| || ||||||| |||| || ||||| || |||||||||
Sbjct 177644 TACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCGCGTCTTCAAC 177585
Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191
|| | |||||||||||||||||||| || || | | | ||||| | || || | ||
Sbjct 177584 GACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTTTGCCATGTAC 177525
Query 94192 CTCGAGCCCTGGCACGCGGAC 94212
|||||||||||||| || |||
Sbjct 177524 CTCGAGCCCTGGCATGCCGAC 177504
Score = 104 bits (114), Expect = 2e-17
Identities = 169/243 (70%), Gaps = 3/243 (1%)
Strand=Plus/Minus
Query 95131 CAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGG 95190
|||||||| ||||||||||||| ||||| || | ||| |||| | ||| | ||
Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293
Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTG 95250
||||| |||| || ||| | || | ||| ||||||| || | ||||| || |||
Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233
Query 95251 GGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAAC 95310
|| |||||| | | | | |||||| | ||| | | |||||| || || |||
Sbjct 175232 GGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAG--- 175176
Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370
|| | | || || || | |||||||||| |||||||| |||||||||||| ||||
Sbjct 175175 GGCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGCAG 175116
Query 95371 CGC 95373
|||
Sbjct 175115 CGC 175113
Score = 87.8 bits (96), Expect = 2e-12
Identities = 75/93 (81%), Gaps = 0/93 (0%)
Strand=Plus/Minus
Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287
|||||||| |||||||||||||| || || | | || | |||||||||||||| |||
Sbjct 177290 GACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCGCGCGACCTCTTCTACGCGCTC 177231
Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320
||| | || ||||| || ||||| |||||||||
Sbjct 177230 TGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 177198
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 494720887169040
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |