Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq43 219 4e-52 >seq43 Length=247289 Score = 219 bits (242), Expect = 4e-52 Identities = 241/321 (75%), Gaps = 0/321 (0%) Strand=Plus/Minus Query 93892 GCCACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTG 93951 ||| | || || ||||||||||| || ||||| || ||| |||| || || ||||| Sbjct 177824 GCCTCGCCCACGCTGTTCAACGCCGGCACCCCCCGCCCCCAGCTGTCCTCCTGCTTCCTA 177765 Query 93952 ATGACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACC 94011 || | | ||||||||| |||| || || | ||||| || ||||| || ||| || Sbjct 177764 GTGTCCATGAAGGCCGACAGCATCGAGGGCATCTACGACACGCTGAAGGAGTGCGCGGCC 177705 Query 94012 ATCTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTACGTGCCAGGGGTTCC 94071 ||||| || | |||||| || ||||| | || | ||| || | ||||||| ||| ||| Sbjct 177704 ATCTCTAAGTCCGCGGGCGGCATCGGCCTGAGCATGCACAACATCCGTGCCACGGGGTCC 177645 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||||||||| ||||| ||| || ||||||| |||| || ||||| || ||||||||| Sbjct 177644 TACATCCGCGGCACCAACGGCTCCAGCAACGGCATCGTGCCCATGCTGCGCGTCTTCAAC 177585 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 || | |||||||||||||||||||| || || | | | ||||| | || || | || Sbjct 177584 GACACCGCGCGCTACGTGGACCAGGGAGGCGGCAAGCGCAAGGGCGCCTTTGCCATGTAC 177525 Query 94192 CTCGAGCCCTGGCACGCGGAC 94212 |||||||||||||| || ||| Sbjct 177524 CTCGAGCCCTGGCATGCCGAC 177504 Score = 104 bits (114), Expect = 2e-17 Identities = 169/243 (70%), Gaps = 3/243 (1%) Strand=Plus/Minus Query 95131 CAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCTCCAACGTGTACAACAGGCGG 95190 |||||||| ||||||||||||| ||||| || | ||| |||| | ||| | || Sbjct 175352 CAGATCCTGGGCAACAACGAGTGCTTCGAGCCGTACACGAGCAACATCTACGTGCGCCGC 175293 Query 95191 GTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCCTACGGGACCTGACGTCTCTG 95250 ||||| |||| || ||| | || | ||| ||||||| || | ||||| || ||| Sbjct 175292 GTGCTGTCCGGCGAGTTCACGGTGGTGAACCAGCACCTGCTGCACGACCTCACCCGCCTG 175233 Query 95251 GGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGCGCCAACGGCTCCGTCCAGAAC 95310 || |||||| | | | | |||||| | ||| | | |||||| || || ||| Sbjct 175232 GGCCTGTGGGACGGCGACATGAAGAACGAGCTGGTGGCGGGCAACGGGTCGGTGCAG--- 175176 Query 95311 ATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAGACCGTGTGGGAGATCCCGCAG 95370 || | | || || || | |||||||||| |||||||| |||||||||||| |||| Sbjct 175175 GGCCTGGACATCCCCGACGCGCTCAAGGCGCTGTACAAGACGGTGTGGGAGATCAAGCAG 175116 Query 95371 CGC 95373 ||| Sbjct 175115 CGC 175113 Score = 87.8 bits (96), Expect = 2e-12 Identities = 75/93 (81%), Gaps = 0/93 (0%) Strand=Plus/Minus Query 94228 GACCTGCGAAAGAACCACGGCAACGATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTC 94287 |||||||| |||||||||||||| || || | | || | |||||||||||||| ||| Sbjct 177290 GACCTGCGCAAGAACCACGGCAAGGAGGAGGCGCGTGCGCGCGACCTCTTCTACGCGCTC 177231 Query 94288 TGGGTGCCAGACCTTTTTATGAAACGCGTCGAG 94320 ||| | || ||||| || ||||| ||||||||| Sbjct 177230 TGGATCCCCGACCTCTTCATGAAGCGCGTCGAG 177198 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494720887169040