Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq43 125 7e-24 seq133 123 2e-23 seq99 102 8e-17 seq90 87.8 2e-12 >seq43 Length=247289 Score = 125 bits (138), Expect = 7e-24 Identities = 181/252 (72%), Gaps = 5/252 (2%) Strand=Plus/Plus Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCGCC-- 154078 |||||||||| |||||||| || | ||| | ||| | ||| || || ||||| ||||| Sbjct 177500 AGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTC 177559 Query 154079 -CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137 ||| || |||| |||| | | | |||||||||||||| |||||| | | |||| ||| Sbjct 177560 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG-TTG 177618 Query 154138 C-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACG 154196 | || ||||||||| ||| | | || ||| || | | |||| | | | | Sbjct 177619 CTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGG 177678 Query 154197 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256 || |||||||| || |||| || ||||| ||||| || |||||| ||||||||| Sbjct 177679 CCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCC 177738 Query 154257 TCGATGCTATCG 154268 |||||||| ||| Sbjct 177739 TCGATGCTGTCG 177750 >seq133 Length=726431 Score = 123 bits (136), Expect = 2e-23 Identities = 167/230 (73%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 170690 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170749 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || |||| | |||| || ||||| ||||| ||||| Sbjct 170750 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 170809 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565 || || || ||||| ||| || || | |||| || | |||||||| ||||||| Sbjct 170810 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG-TCAATGGTGTCGGAGGACTCCA 170868 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615 | |||| ||| | || || || ||||| || || || || ||||||||| Sbjct 170869 CTTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918 Score = 91.5 bits (100), Expect = 1e-13 Identities = 101/135 (75%), Gaps = 0/135 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 |||||| |||| |||| || | || | | | |||||||| || |||||||||||| Sbjct 170918 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170977 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || || || ||||||||| || || |||| | |||| || |||||||||||||| || Sbjct 170978 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGG 171037 Query 138507 TATACCTTCTTTGTC 138521 || || || ||||| Sbjct 171038 GATGCCCTCCTTGTC 171052 >seq99 Length=333813 Score = 102 bits (112), Expect = 8e-17 Identities = 151/212 (71%), Gaps = 3/212 (1%) Strand=Plus/Plus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400 || ||||| | ||||| ||||||||||| ||||| || || | | ||||||||| Sbjct 93200 AAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCG-CAGAGCGA--TTCGCCGAGCGC 93256 Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460 |||| ||||| ||| || |||||| | || || |||||| ||| | |||||| Sbjct 93257 CTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCTTCTGCTCCATCTAC 93316 Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520 | | || | | || | ||||| || ||||| ||| ||||||| | || || ||| Sbjct 93317 TGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGC 93376 Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT 52552 || || || |||||||| |||||||| ||||| Sbjct 93377 GATGAGGGCCTGCACACCGACTTTGCCTGCCT 93408 >seq90 Length=671320 Score = 87.8 bits (96), Expect = 2e-12 Identities = 152/216 (70%), Gaps = 9/216 (4%) Strand=Plus/Plus Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC-GCCACGCTGGCCGAGCG 52399 |||||||| ||||||| | | |||||||| |||| || || ||| || |||| Sbjct 288298 AAAAAGGCGGAGTGGGCCCTCAGGTGGATCGGCAGCGGGTCCAGCTTCGC--GC--AGCG 288353 Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459 |||||||||| ||| || |||||| | | || |||||| |||| ||||||| Sbjct 288354 GCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTA 288413 Query 52460 TTACATTAAAACGAAAGGCA--TAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517 | | || | | |||| | ||||||||||| || ||| |||||| | || || Sbjct 288414 CTGGCTCAAGAAGC--GGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCC 288471 Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553 || || || || |||||||| |||||||| |||||| Sbjct 288472 CGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTC 288507 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496260079973280