Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_011345.1
Length=155122
Score E
Sequences producing significant alignments: (Bits) Value
seq43 125 7e-24
seq133 123 2e-23
seq99 102 8e-17
seq90 87.8 2e-12
>seq43
Length=247289
Score = 125 bits (138), Expect = 7e-24
Identities = 181/252 (72%), Gaps = 5/252 (2%)
Strand=Plus/Plus
Query 154021 AGATGTCGGCGTGCCAGGGTTCAATGTAGACGGCCAGGGCACCTTTACGCTTTCCGCC-- 154078
|||||||||| |||||||| || | ||| | ||| | ||| || || ||||| |||||
Sbjct 177500 AGATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTC 177559
Query 154079 -CTGATCGACGTGGCGCACCATATTGTTGAAGACGCGCACCATGGGTTCCAGGCCGCTTG 154137
||| || |||| |||| | | | |||||||||||||| |||||| | | |||| |||
Sbjct 177560 CCTGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCG-TTG 177618
Query 154138 C-GGTGCCGTTGGTCGAATTGATCTTGCTGCCGCGGGCGCGCACTTGATGCACGTTAACG 154196
| || ||||||||| ||| | | || ||| || | | |||| | | | |
Sbjct 177619 CTGGAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGG 177678
Query 154197 CCAATGCCGCCGCCGTACTTTGATATGGCAGCGCAGTCGCCCAGCGTCCTGTAGATGCCG 154256
|| |||||||| || |||| || ||||| ||||| || |||||| |||||||||
Sbjct 177679 CCGATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCC 177738
Query 154257 TCGATGCTATCG 154268
|||||||| |||
Sbjct 177739 TCGATGCTGTCG 177750
>seq133
Length=726431
Score = 123 bits (136), Expect = 2e-23
Identities = 167/230 (73%), Gaps = 2/230 (1%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 170690 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170749
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||||||||| || || |||| | |||| || ||||| ||||| |||||
Sbjct 170750 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGG 170809
Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTA-ATTGTTCCACGGTGTCGGTCGACTCCA 138565
|| || || ||||| ||| || || | |||| || | |||||||| |||||||
Sbjct 170810 GATGCCCTCCTTGTCCTGGATCTTGGCCTTCACATTG-TCAATGGTGTCGGAGGACTCCA 170868
Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCATG 138615
| |||| ||| | || || || ||||| || || || || |||||||||
Sbjct 170869 CTTCGAGCGTAATGGTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCATG 170918
Score = 91.5 bits (100), Expect = 1e-13
Identities = 101/135 (75%), Gaps = 0/135 (0%)
Strand=Plus/Plus
Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446
|||||| |||| |||| || | || | | | |||||||| || ||||||||||||
Sbjct 170918 GCCGCCGCGCAGGCGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGA 170977
Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506
|| || || ||||||||| || || |||| | |||| || |||||||||||||| ||
Sbjct 170978 CAGGGTGCGGCCGTCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGG 171037
Query 138507 TATACCTTCTTTGTC 138521
|| || || |||||
Sbjct 171038 GATGCCCTCCTTGTC 171052
>seq99
Length=333813
Score = 102 bits (112), Expect = 8e-17
Identities = 151/212 (71%), Gaps = 3/212 (1%)
Strand=Plus/Plus
Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACCGCCACGCTGGCCGAGCGC 52400
|| ||||| | ||||| ||||||||||| ||||| || || | | |||||||||
Sbjct 93200 AAGAAGGCCGACTGGGCGCTGAAGTGGATCTCGAGCG-CAGAGCGA--TTCGCCGAGCGC 93256
Query 52401 ATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTTT 52460
|||| ||||| ||| || |||||| | || || |||||| ||| | ||||||
Sbjct 93257 CTGGTCGCCTTTGCCTGCGTGGAGGGCATATTCTTCTCCGGCTCCTTCTGCTCCATCTAC 93316
Query 52461 TACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCGCGC 52520
| | || | | || | ||||| || ||||| ||| ||||||| | || || |||
Sbjct 93317 TGGGTGAAGAAGCGGGGGCTCATGCCGGGGCTGACCTTCTCCAACGAGCTCATCTCCCGC 93376
Query 52521 GACGAAGGACTGCACACGGACTTTGCGTGCCT 52552
|| || || |||||||| |||||||| |||||
Sbjct 93377 GATGAGGGCCTGCACACCGACTTTGCCTGCCT 93408
>seq90
Length=671320
Score = 87.8 bits (96), Expect = 2e-12
Identities = 152/216 (70%), Gaps = 9/216 (4%)
Strand=Plus/Plus
Query 52341 AAAAAGGCTCAGTGGGCAATGAAGTGGATCGAGAGCGACACC-GCCACGCTGGCCGAGCG 52399
|||||||| ||||||| | | |||||||| |||| || || ||| || ||||
Sbjct 288298 AAAAAGGCGGAGTGGGCCCTCAGGTGGATCGGCAGCGGGTCCAGCTTCGC--GC--AGCG 288353
Query 52400 CATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCATCTT 52459
|||||||||| ||| || |||||| | | || |||||| |||| |||||||
Sbjct 288354 GCTGGTGGCCTTTGCCTGCGTGGAGGGCATCCTCTTCTCCGGCTCCTTTTGTGCCATCTA 288413
Query 52460 TTACATTAAAACGAAAGGCA--TAATGCCCGGCCTGACGTTCAGCAACGAGTTGATATCG 52517
| | || | | |||| | ||||||||||| || ||| |||||| | || ||
Sbjct 288414 CTGGCTCAAGAAGC--GGCACCTCATGCCCGGCCTCACCTTCTCAAACGAGCTCATCTCC 288471
Query 52518 CGCGACGAAGGACTGCACACGGACTTTGCGTGCCTC 52553
|| || || || |||||||| |||||||| ||||||
Sbjct 288472 CGTGATGAGGGCCTGCACACCGACTTTGCCTGCCTC 288507
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496260079973280
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