Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_013085.1 Length=194454 Score E Sequences producing significant alignments: (Bits) Value seq243 684 0.0 seq260 538 4e-148 >seq243 Length=18593 Score = 684 bits (758), Expect = 0.0 Identities = 738/977 (76%), Gaps = 0/977 (0%) Strand=Plus/Plus Query 7544 TCAAGAGGGAAGTTGTGAGCATTACGCTCGTGCATGACTTCCATGCCAAGACCAGCACGG 7603 || || ||||| ||||| |||||||| || ||||| |||||||| |||||| ||||||| Sbjct 2870 TCTAGTGGGAAATTGTGTGCATTACGTTCATGCATAACTTCCATACCAAGATTAGCACGG 2929 Query 7604 TTGAGCACGTCTGCCCAGGTGTTCAGGACACGACCTTGACCATCAATGATGGACTGGTTG 7663 || | | || ||||| ||||| | ||||||||||| ||||| | || ||||| Sbjct 2930 TTAATAATATCAGCCCAAGTGTTAATAACACGACCTTGTGAATCAACTACTGATTGGTTA 2989 Query 7664 AAGTTGAAACCGTTGAGGTTGAATGCCATGGTGCTAACACCAAGAGCAGTGAACCAGATG 7723 ||||||||||| || | ||| |||||||| || || ||| | |||||| ||||| || Sbjct 2990 AAGTTGAAACCATTTAAGTTAAATGCCATAGTTGAAATACCTAAAGCAGTAAACCAAATA 3049 Query 7724 CCAACAACTGGCCATGCTGCGAGGAAGAAGTGCAGCGAACGGGAGTTGTTGAACGAAGCG 7783 |||||||||||||| || || | ||||||||| | ||||| ||||| || || || ||| Sbjct 3050 CCAACAACTGGCCAAGCAGCTAAGAAGAAGTGTAAAGAACGAGAGTTATTAAAAGATGCG 3109 Query 7784 TATTGGAAGATCAGACGACCAAAGTATCCGTGAGCAGCAACGATGTTGTAGGTCTCTTCT 7843 |||||||| || | |||||| || ||||| |||||||| ||||||||||| || |||||| Sbjct 3110 TATTGGAAAATTAAACGACCGAAATATCCATGAGCAGCTACGATGTTGTAAGTTTCTTCT 3169 Query 7844 TCTTGACCGAACTTATAACCATAGTTCTGGGACTCAGACTCAGTGGTTTCACGAACCAGA 7903 | ||| ||||| || |||||| ||| || || ||||| |||||||||| | | Sbjct 3170 TGTTGTCCGAATTTGTAACCAACGTTAGCAGATTCGTTTTCAGTTGTTTCACGAATTAAA 3229 Query 7904 GAAGAGGTTACAAGCGAACCATGCATCGCACTGAACAGAGAACCACCAAAGACACCAGCG 7963 ||||| ||||| | ||||||||||| ||| || | ||||||||||| |||||||| Sbjct 3230 GAAGAAGTTACTAATGAACCATGCATTGCAGAAAATAATGAACCACCAAATACACCAGCA 3289 Query 7964 ACGCCCAGCATGTGGAAGGGGTGCATCAGGATGTTGTGCTCTGCTTGGAAGACAAGCATG 8023 || || ||||| ||||| |||||||| | ||||| || ||||||||||| || | ||| Sbjct 3290 ACACCAAGCATATGGAATGGGTGCATTAAAATGTTATGTTCTGCTTGGAATACGATCATA 3349 Query 8024 TAGTTGAACGTACCAGAGATGCCAAGAGGCATAGCGTCAGAGAAAGAACCTTGACCGAAA 8083 | ||||| |||||||| || || | |||||| | |||||||| |||||||| || | Sbjct 3350 AAATTGAAAGTACCAGAAATACCTAATGGCATACCATCAGAGAATGAACCTTGTCCAATT 3409 Query 8084 GGATAGACGAGGAATACAGCAGATGCTGCAGCAACTGGAGCAGAGTATGCTACACAGATC 8143 ||||| | | ||||||||||| ||||||||||| || || || || || || |||| Sbjct 3410 GGATAAATAATGAATACAGCAGTAGCTGCAGCAACAGGTGCTGAATAAGCAACTGCGATC 3469 Query 8144 CAGGGACGCATACCTAGACGGTAAGAAAGTTCCCACTCACGACCCATGTATGCATAGATA 8203 || ||||||||||||| |||| |||| | |||||| |||||||||||||||| | | || Sbjct 3470 CACGGACGCATACCTAAACGGAAAGATAATTCCCATTCACGACCCATGTATGAACAAATT 3529 Query 8204 CCGATCAGGAAGTGGAAGATAACGAGTTGGAAAGGACCACCGTTGTAGAGCCACTCATCA 8263 || | | ||||| | | | |||||| |||| ||||| || || | ||| || ||| Sbjct 3530 CCTAAGAAAAAGTGACATACGATAAGTTGGTAAGGTCCACCATTATATAACCATTCGTCA 3589 Query 8264 AGAGAAGCTGCTTCCCAGATGGGATAGAAGTGGAGACCAATAGCGTTAGAAGAAGGAACA 8323 |||||||| ||||||||||| || || || || | |||||| ||||| |||| || || Sbjct 3590 AGAGAAGCAGCTTCCCAGATTGGGTAAAAATGTAAACCAATTGCGTTTGAAGTTGGTACT 3649 Query 8324 ACAGCACCAGAGATGATGTTGTTGCCATACATGAGCGAACCAGCGACGGGTTCACGGATG 8383 ||||| ||||| || ||||| || ||||| | | ||||| | || ||||| || || Sbjct 3650 ACAGCGCCAGAAATTATGTTATTTCCATATAGTAATGAACCTGATACTGGTTCGCGAATA 3709 Query 8384 CCGTCAATGTCCACAGGAGGAGCAGCGACGAAAGCGACGATGAAACAAATAGCAGCAGCG 8443 || ||||| || || || |||||||||| ||||||| || ||| | ||| || | Sbjct 3710 CCATCAATATCTACTGGCGGAGCAGCGATAAAAGCGATAATAAAAACAGTAGTTGCTGTT 3769 Query 8444 AGCAGCGTAGGAATCATCAGGACACCGAACCAACCGACATACAGACGATTGTTGGTGGAG 8503 | | ||||| ||||| || ||||| |||||||| ||||| | || || | ||| Sbjct 3770 AATAATGTAGGGATCATAAGAACACCAAACCAACCAACATATAAGCGGTTTTCAGTGCTT 3829 Query 8504 GTTACCCAGTTACAGAA 8520 |||||||| | ||| || Sbjct 3830 GTTACCCACTCACAAAA 3846 >seq260 Length=66046 Score = 538 bits (596), Expect = 4e-148 Identities = 745/1039 (72%), Gaps = 4/1039 (0%) Strand=Plus/Plus Query 6257 TATCACAGAGCGTTGCCTCTTGGCAATACTTCTTCAGGAAATACAAAGTTTTCATGTGGT 6316 ||| | |||||||| || | ||| || || || || || ||||| || |||||||| || Sbjct 56633 TATTAAAGAGCGTTTCCACGTGGTAAAACCTCCTCTGGGAATACTAATTTTTCATGAGGC 56692 Query 6317 TGATCCACTGGTGCCATCCAGGCACGTAGACCTTCATTCAATAGGATGTTCTTGGTATAG 6376 ||||| | |||||||| ||||| | |||||||||||| || || || || ||||| Sbjct 56693 TGATCTTGAGCAGCCATCCAAGCACGAATACCTTCATTCAAAAGAATATTTTTTGTATAA 56752 Query 6377 AACGTCTCGAACTCTGGATCCTCCGCTGCTCTGATCTCTTGTGAAACAAAGTCATAAGCT 6436 || || || || ||||| || || || || | || ||||||||||| || || | || Sbjct 56753 AAAGTTTCAAATTCTGGGTCTTCAGCAGCACGAATTTCTTGTGAAACGAAATCGGATGCA 56812 Query 6437 C-TAAGGTTAAGTGCAAGACCAATAATACCAATGCTAGAGGTCCAAAGACCCATAACAGG 6495 | ||| |||| ||| | || | | ||||| | ||||| | ||| | || || Sbjct 56813 CGTAAATTTAA-TGCTAAGCCTACTACACCAAAAGCACTAGTCCATAAACCAGTTACTGG 56871 Query 6496 AACAAACAGCATAAAGAAATGTAGCCAACGCTTATTGCTGAAGGCGATACCAAAGATCTG 6555 ||||| | |||||||||||||| |||||| ||||| || || | ||| || || || Sbjct 56872 TACAAATAACATAAAGAAATGTAACCAACGTTTATTAGAAAACGCTACACCGAATATTTG 56931 Query 6556 AGACCAGAAACGATTAGCCGTGACCATCGAATAGGTCTCCTCTTCTTGTGTAGGCTCAAA 6615 ||||| || ||||| || || || | ||||| || || ||| |||| || || | ||| Sbjct 56932 TGACCAAAAGCGATTTGCTGTTACAAAAGAATAAGTTTCTTCTGCTTGAGTTGGATTAAA 56991 Query 6616 CGCCTTGAAAGTATTTGATTGTTCACCATCTTCAAACAAAGTATTCTCTACAGTAGCACC 6675 ||| || || |||| || ||||||||||| | |||||| ||||| || || || Sbjct 56992 CGCACGAAATGTGTTTGCACCGTCGCCATCTTCAAATAGAGTATTTTCTACTGTTGCGCC 57051 Query 6676 GTGAATAGCACAGAGCAATGCTCCACCTAAGATACCTGCTACACCCATCATATGAAACGG 6735 ||||| ||||| || | || | |||| | ||| || ||||||||||||||||| || Sbjct 57052 ATGAATTGCACAAAGAAGCGCAGCTCCTAGAACACCAGCAACACCCATCATATGAAAAGG 57111 Query 6736 GTTGAGCGTCCAGTTGTGGAAGCCCTGTAGGAAGAGTAAGAAGCGGAATATCGCTGCAAC 6795 || | |||||||||||||| || || | ||| | | || ||||| || |||||||| Sbjct 57112 ATTCAAAGTCCAGTTGTGGAAACCTTGGAAGAATAAAATAAAACGGAAAATAGCTGCAAC 57171 Query 6796 ACCAAACGACGGCGCAAAGAACCAACTGGACTGTCCGAGAGGATACATGAGAAAGACAGA 6855 |||||| ||| ||||| |||||||| || || || | || || || | ||| |||| Sbjct 57172 ACCAAAACTCGGTGCAAAAAACCAACTAGATTGACCTAATGGGTAAATTAAAAATACAGC 57231 Query 6856 CACAAAGACAGCAATGGGACCAGAAAACGCGATTGCATTGTAGGGACGAATACCGACTAG 6915 ||||| || ||||| || ||||||| || ||||| || || || ||||| ||| Sbjct 57232 AACAAAAACTGCAATAGGTGCAGAAAATGCAATTGCGTTATATGGGCGAATTTTAACTGA 57291 Query 6916 ACGTGCGATCTCAAACTGCCGAAGCATGAAACCTATAAGGGCAAAGGCTCCGTGGAGCGC 6975 ||||||||| || || || |||||||| || || || | | ||| || ||||| || || Sbjct 57292 ACGTGCGATTTCGAATTGACGAAGCATAAATCCAATTAAAGAAAAAGCACCGTGTAGTGC 57351 Query 6976 CACAAAAGGCCATAGTCCCCCAAGTTGGAGCCAGCGGACGAAATCTCCCTGAGCTTCTGG 7035 ||||| | ||| || || ||||||||| ||| || ||||| || |||||||| || Sbjct 57352 AACAAATGTCCAAAGACCTCCAAGTTGGCACCAACGAGTAAAATCACCTTGAGCTTCGGG 57411 Query 7036 ACCCCATAGAAGAAGTAGGGAATGTCCGAGAGCGTCAGCAGGAGTTGATACAGCAGCAGT 7095 |||||||| || | || ||||| || | | | ||| || || || |||||| |||| Sbjct 57412 ACCCCATAAAAATAATAAAGAATGCCCCATACTATTAGCGGGTGTAGAAACAGCAACAGT 57471 Query 7096 AAGGAAATTACATCCCTCAAGATACGAAGAAGCAATCCCGTGAGTGTACCAGCTCGTGAC 7155 | || || || ||||| | ||| |||| ||| | || ||||| ||||| | || Sbjct 57472 TAAAAAGTTGCAACCCTCTAAATAAGAAGTAGCTAAGCCATGAGTATACCAAGAACTTAC 57531 Query 7156 GAAAGTTGTGCCCGTGAGCCAACCGCCCAGTGCCAGGTAAGCAGTAGGGAACAGAAGAAG 7215 || ||||| || || | |||||| || | ||| | || ||||||||||| | | || Sbjct 57532 AAATGTTGTTCCAGTTAACCAACCACCTAATGCTAAATATGCAGTAGGGAATAATAATAG 57591 Query 7216 ACCTGACCAACCAACAAAAACGAACCTATCACGCTTAAGCCAGTCATCGAGTACATCAAA 7275 ||||||||| |||| ||| || || | |||||| |||||||||||| | | |||||| Sbjct 57592 ACCTGACCAGCCAATAAATACAAAACGATCACGACGAAGCCAGTCATCAACGATATCAAA 57651 Query 7276 CCACCCCCTTGTTGTTCTT 7294 ||| || | ||| ||||| Sbjct 57652 CCAACCAC--GTTTTTCTT 57668 Score = 95.1 bits (104), Expect = 2e-14 Identities = 70/82 (85%), Gaps = 0/82 (0%) Strand=Plus/Minus Query 176122 TGGGCAGGGAGGGATTTGAACCCCCGTAGGCAGAGCCAGCGGATTTACAGTCCGCCTCCA 176181 ||||| | | ||||||||||| |||||||| |||||||||||||||| |||||| ||| Sbjct 40923 TGGGCCGAGCTGGATTTGAACCAGCGTAGGCAAAGCCAGCGGATTTACAATCCGCCCCCA 40864 Query 176182 TTAACCACTCGGACACCTACCC 176203 |||||||||||| || | |||| Sbjct 40863 TTAACCACTCGGGCATCGACCC 40842 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 622121891566560