Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_013288.1 Length=191761 Score E Sequences producing significant alignments: (Bits) Value seq99 123 3e-23 seq90 120 4e-22 seq43 86.0 8e-12 >seq99 Length=333813 Score = 123 bits (136), Expect = 3e-23 Identities = 122/158 (77%), Gaps = 0/158 (0%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| || ||||||||||| || || |||||| ||| || Sbjct 93402 GCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCC 93343 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||||||| |||| | || | || || ||||| |||||||| || Sbjct 93342 GGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATATG 93283 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677 |||||||| || || || || | || |||||||| || Sbjct 93282 CCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA 93245 >seq90 Length=671320 Score = 120 bits (132), Expect = 4e-22 Identities = 151/207 (73%), Gaps = 3/207 (1%) Strand=Plus/Minus Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579 ||||| || ||| || ||||| |||||||||||||| || || |||||| || || Sbjct 288500 GCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCCG 288441 Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639 |||||||| ||||||||| | |||| | || |||||||| ||||| ||||||| ||| Sbjct 288440 GGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGATG 288381 Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699 |||||||| || || || || | || |||| || | ||| |||| | | | | Sbjct 288380 CCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC---GAAGCTGGACCCGCTGCCGATC 288324 Query 127700 CACTTCATCGCCCACTGTGCCTTTTTC 127726 ||| | | ||||||| ||||||||| Sbjct 288323 CACCTGAGGGCCCACTCCGCCTTTTTC 288297 >seq43 Length=247289 Score = 86.0 bits (94), Expect = 8e-12 Identities = 116/159 (73%), Gaps = 2/159 (1%) Strand=Plus/Plus Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAG 116705 |||||| |||||| ||||| |||||||| ||||| ||| |||| |||| | Sbjct 177094 CCCTCCCGCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC-CAGCAGTCTGCCAT 177152 Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765 || || |||| | || |||||||| ||||| || |||| || |||||||| Sbjct 177153 GCCCGGGGCCTCGTTGGGGCAGAAGAGGGACCAGGTCTCATTGGCCTCGACGCGCTTCAT 177212 Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804 ||||||||| |||||||||||||| ||||||| || || Sbjct 177213 GAAGAGGTCGGGGATCCAGAGCGCGTAGAAGAGGTCGCG 177251 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 613504331853840