Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_013288.1
Length=191761
Score E
Sequences producing significant alignments: (Bits) Value
seq99 123 3e-23
seq90 120 4e-22
seq43 86.0 8e-12
>seq99
Length=333813
Score = 123 bits (136), Expect = 3e-23
Identities = 122/158 (77%), Gaps = 0/158 (0%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| || ||||| || ||||||||||| || || |||||| ||| ||
Sbjct 93402 GCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAGCCCC 93343
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| ||||||||||||| |||| | || | || || ||||| |||||||| ||
Sbjct 93342 GGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAATATG 93283
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAA 127677
|||||||| || || || || | || |||||||| ||
Sbjct 93282 CCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA 93245
>seq90
Length=671320
Score = 120 bits (132), Expect = 4e-22
Identities = 151/207 (73%), Gaps = 3/207 (1%)
Strand=Plus/Minus
Query 127520 GCAAACTCTTGGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCT 127579
||||| || ||| || ||||| |||||||||||||| || || |||||| || ||
Sbjct 288500 GCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAGGCCG 288441
Query 127580 GGCATGAGACCCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATC 127639
|||||||| ||||||||| | |||| | || |||||||| ||||| ||||||| |||
Sbjct 288440 GGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAGGATG 288381
Query 127640 CCCTCCACACACGCGAACGCAAATAGACGCTCGGCAAAGGAGCGGGACTTTGTATCAAAC 127699
|||||||| || || || || | || |||| || | ||| |||| | | | |
Sbjct 288380 CCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGC---GAAGCTGGACCCGCTGCCGATC 288324
Query 127700 CACTTCATCGCCCACTGTGCCTTTTTC 127726
||| | | ||||||| |||||||||
Sbjct 288323 CACCTGAGGGCCCACTCCGCCTTTTTC 288297
>seq43
Length=247289
Score = 86.0 bits (94), Expect = 8e-12
Identities = 116/159 (73%), Gaps = 2/159 (1%)
Strand=Plus/Plus
Query 116647 CCCTCCTCCTCGTACTTTGTGTAGAGGGCCTCAAACTCTTCACCCACAGCC-TCTGAGAG 116705
|||||| |||||| ||||| |||||||| ||||| ||| |||| |||| |
Sbjct 177094 CCCTCCCGCTCGTAGCGGGTGTACAGGGCCTCGAACTCGGGGCCC-CAGCAGTCTGCCAT 177152
Query 116706 CCCTGGTGCCTTATCTGGACAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCAT 116765
|| || |||| | || |||||||| ||||| || |||| || ||||||||
Sbjct 177153 GCCCGGGGCCTCGTTGGGGCAGAAGAGGGACCAGGTCTCATTGGCCTCGACGCGCTTCAT 177212
Query 116766 GAAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCG 116804
||||||||| |||||||||||||| ||||||| || ||
Sbjct 177213 GAAGAGGTCGGGGATCCAGAGCGCGTAGAAGAGGTCGCG 177251
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 613504331853840
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |