Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_013668.3
Length=248526
Score E
Sequences producing significant alignments: (Bits) Value
seq43 149 1e-30
>seq43
Length=247289
Score = 149 bits (164), Expect = 1e-30
Identities = 304/442 (69%), Gaps = 11/442 (2%)
Strand=Plus/Plus
Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898
|| |||||| ||||||| ||||||| | || | | | | | ||| |||||||| ||
Sbjct 174918 CTGGTCCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCC 174977
Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958
||||| || ||||||| ||| |||| | ||| | ||| | || |||| | ||||||
Sbjct 174978 CGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCAAAGTTGGG 175037
Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017
||| | |||||| | ||| | |||||| || |||||| | | |||| ||||| ||||
Sbjct 175038 GTCCGACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACG-CGCCGCGATCCGCGG 175096
Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076
|||| | | | || |||| |||||||||||||||||| ||| || || | |
Sbjct 175097 CCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAGCG 175156
Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC-ATCC 204134
|| | || || | ||| | |||| | ||| |||||| | |||| ||| ||| ||
Sbjct 175157 CGTCGGGG---ATGT--CCAGGCCCTGCACCGACCCGTTGCCCGCCACCAG-CTCGTTCT 175210
Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194
|| | || | |||||| ||||| | | | || || ||| |||||| |||| | |
Sbjct 175211 TCATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCA 175270
Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254
| || || ||||||||||| | || | | | |||| | ||| | || |||||
Sbjct 175271 CCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGC 175330
Query 204255 CCTCGTTGTTGCCGAAAATCTG 204276
|||||||||||| | |||||
Sbjct 175331 ACTCGTTGTTGCCCAGGATCTG 175352
Score = 104 bits (114), Expect = 4e-17
Identities = 222/332 (67%), Gaps = 0/332 (0%)
Strand=Plus/Plus
Query 205262 ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCC 205321
|||||||| ||||| ||||| | ||| ||| | ||||| | |||| || |||
Sbjct 177502 ATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTCCC 177561
Query 205322 TGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCG 205381
|||||||| ||| | | ||||||| || |||||||| ||||| | |||||| |
Sbjct 177562 TGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGCTG 177621
Query 205382 GTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCA 205441
| ||||| |||| | |||| || || || | | |||| ||| | |||
Sbjct 177622 GAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGGCCG 177681
Query 205442 ATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCG 205501
|| ||||| | |||| | ||| |||||||| | ||| ||| ||||||||| ||
Sbjct 177682 ATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCG 177741
Query 205502 ATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCC 205561
||| ||| || || | ||| || |||| || | ||||| || | ||||||
Sbjct 177742 ATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCG 177801
Query 205562 GCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593
|||| ||| |||||||| |||||| ||||
Sbjct 177802 GCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 795151482649440
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |