Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_013668.3 Length=248526 Score E Sequences producing significant alignments: (Bits) Value seq43 149 1e-30 >seq43 Length=247289 Score = 149 bits (164), Expect = 1e-30 Identities = 304/442 (69%), Gaps = 11/442 (2%) Strand=Plus/Plus Query 203839 CTTGTCCACCGTGAACTGAATGGCGTTCACGGCAGGCCTGCTTCTCAGATAGTACATGCC 203898 || |||||| ||||||| ||||||| | || | | | | | ||| |||||||| || Sbjct 174918 CTGGTCCACGGTGAACTTGATGGCGTCGGCCGCGGCGCGGGTGCGCAGGTAGTACATCCC 174977 Query 203899 GGTCTTTAGGCCCTTCTGCCACCCGTACATGTGCATGGAAGACAGTTTGCTCACGTTGGG 203958 ||||| || ||||||| ||| |||| | ||| | ||| | || |||| | |||||| Sbjct 174978 CGTCTTCAGCCCCTTCTTCCAGGCGTAGAAGTGGAGGGAGGTGAGCTTGCCAAAGTTGGG 175037 Query 203959 GTCGGCCATGTGAATGTTCAGAGACTGGCTTTGGTCGATGAAAGGCGCC-CGATCTGCGG 204017 ||| | |||||| | ||| | |||||| || |||||| | | |||| ||||| |||| Sbjct 175038 GTCCGACATGTGCACGTTGAAGGACTGGGACTGATCGATGTACG-CGCCGCGATCCGCGG 175096 Query 204018 CCATATTGATAATGGTCTTCTGCGAAATCTCCCACACCGTCTTGAACA-CGTCTCTGGTG 204076 |||| | | | || |||| |||||||||||||||||| ||| || || | | Sbjct 175097 CCATGTCCACCAGCGTGCGCTGCTTGATCTCCCACACCGTCTTGTACAGCGCCTTGAGCG 175156 Query 204077 TGTTGAGGCACATCTTCCCACGTCCTG-ATCGAGCCGTTGTCGGCCATCAGTCTC-ATCC 204134 || | || || | ||| | |||| | ||| |||||| | |||| ||| ||| || Sbjct 175157 CGTCGGGG---ATGT--CCAGGCCCTGCACCGACCCGTTGCCCGCCACCAG-CTCGTTCT 175210 Query 204135 TCGTCTCCTCCCCCCACATGCCCAACCTGATCAGCTCCCGCACCAGGTGGGGGTTGATGA 204194 || | || | |||||| ||||| | | | || || ||| |||||| |||| | | Sbjct 175211 TCATGTCGCCGTCCCACAGGCCCAGGCGGGTGAGGTCGTGCAGCAGGTGCTGGTTCACCA 175270 Query 204195 TCTGAAAGTCTCCGGACAGCACCCCTCGGGTGAACAGGTTGTTGGTGAATGGTTCGAACG 204254 | || || ||||||||||| | || | | | |||| | ||| | || ||||| Sbjct 175271 CCGTGAACTCGCCGGACAGCACGCGGCGCACGTAGATGTTGCTCGTGTACGGCTCGAAGC 175330 Query 204255 CCTCGTTGTTGCCGAAAATCTG 204276 |||||||||||| | ||||| Sbjct 175331 ACTCGTTGTTGCCCAGGATCTG 175352 Score = 104 bits (114), Expect = 4e-17 Identities = 222/332 (67%), Gaps = 0/332 (0%) Strand=Plus/Plus Query 205262 ATGTCGGCGTGCCACGGCTCTAACCACACGGCCATTGCGCCTGGCCTCTTGTTCCCACCC 205321 |||||||| ||||| ||||| | ||| ||| | ||||| | |||| || ||| Sbjct 177502 ATGTCGGCATGCCAGGGCTCGAGGTACATGGCAAAGGCGCCCTTGCGCTTGCCGCCTCCC 177561 Query 205322 TGGTCCACCATGCGAGTCATCGCGTTGAAAACTCGCAGCATCGGCACCAGACCGTTGGCG 205381 |||||||| ||| | | ||||||| || |||||||| ||||| | |||||| | Sbjct 177562 TGGTCCACGTAGCGCGCGGTGTCGTTGAAGACGCGCAGCATGGGCACGATGCCGTTGCTG 177621 Query 205382 GTCCCGTTCGTGCTGTTGATGGCCGAGCCTTCAGCCCTCACGTTGGAGATGGCCGCGCCA 205441 | ||||| |||| | |||| || || || | | |||| ||| | ||| Sbjct 177622 GAGCCGTTGGTGCCGCGGATGTAGGACCCCGTGGCACGGATGTTGTGCATGCTCAGGCCG 177681 Query 205442 ATCCCGCCAGAACACTTGGCGATCTGGGCGCACTCTTGCAGAGTGCTGTAGATGCCTGCG 205501 || ||||| | |||| | ||| |||||||| | ||| ||| ||||||||| || Sbjct 177682 ATGCCGCCCGCGGACTTAGAGATGGCCGCGCACTCCTTCAGCGTGTCGTAGATGCCCTCG 177741 Query 205502 ATGGAATCGTCCGCCAGTGTCACCAGATAGCACGAAGCCAGCTTGGCAAAGTTGGTGCCC 205561 ||| ||| || || | ||| || |||| || | ||||| || | |||||| Sbjct 177742 ATGCTGTCGGCCTTCATGGACACTAGGAAGCAGGAGGACAGCTGGGGGCGGGGGGTGCCG 177801 Query 205562 GCGTGGAAGAGCGTGGGGCTGGCGTGGCTGAA 205593 |||| ||| |||||||| |||||| |||| Sbjct 177802 GCGTTGAACAGCGTGGGCGAGGCGTGAGTGAA 177833 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 795151482649440