Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_013772.1
Length=176677
Score E
Sequences producing significant alignments: (Bits) Value
seq133 167 3e-36
seq149 84.2 2e-11
>seq133
Length=726431
Score = 167 bits (184), Expect = 3e-36
Identities = 166/215 (77%), Gaps = 0/215 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 170703 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 170762
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||||||||| || |||| |||||||||||||| || | || |||||||
Sbjct 170763 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGCTGGTCGGGAGGGATGCCCTCCTTG 170822
Query 46499 TCCATGATCTTCTTCTTGAGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATG 46558
||| |||||| ||| | | | | |||||| || ||||| || | ||| |||
Sbjct 170823 TCCTGGATCTTGGCCTTCACATTGTCAATGGTGTCGGAGGACTCCACTTCGAGCGTAATG 170882
Query 46559 GTTTTGCCCGTCAGCGTTTTAACAAAGATTTGCAT 46593
|| |||||||||||||| || || ||||| |||||
Sbjct 170883 GTCTTGCCCGTCAGCGTCTTGACGAAGATCTGCAT 170917
Score = 120 bits (132), Expect = 3e-22
Identities = 105/131 (80%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| |||||| |||| || |||||| ||||| ||||||||||| || ||||| ||
Sbjct 170931 CGCAGCACCAGGTGCAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCG 170990
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| ||||||||||||||||| || |||| |||||| ||||| | || | || |||||||
Sbjct 170991 TCCTCGAGCTGCTTGCCGGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATGCCCTCCTTG 171050
Query 46499 TCCATGATCTT 46509
||| ||||||
Sbjct 171051 TCCTGGATCTT 171061
>seq149
Length=203194
Score = 84.2 bits (92), Expect = 2e-11
Identities = 97/131 (74%), Gaps = 0/131 (0%)
Strand=Plus/Plus
Query 46379 CGCAACACCAGATGCAATGTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCG 46438
|||| ||||| || | || |||||| ||||| ||||||||||| || ||||| |
Sbjct 6861 CGCAGGACCAGGTGGAGGGTGGACTCCTTCTGGATGTTGTAGTCGGACAGGGTGCGGCCA 6920
Query 46439 TCGTCGAGCTGCTTGCCGGCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTG 46498
|| || ||||||||||| || || |||| |||||| ||||| | || | | ||||||
Sbjct 6921 TCCTCCAGCTGCTTGCCCGCAAAGATCAGGCGCTGTTGGTCCGGGGGGATTCCCTCCTTA 6980
Query 46499 TCCATGATCTT 46509
||| |||||
Sbjct 6981 TCCTGAATCTT 6991
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 565235757510480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |