Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201
4-08-01] 374 sequences; 22,924,637 total letters
Query= NC_013953.1
Length=156344
Score E
Sequences producing significant alignments: (Bits) Value
seq133 145 8e-30
seq99 132 5e-26
seq90 105 7e-18
seq149 98.7 1e-15
>seq133
Length=726431
Score = 145 bits (160), Expect = 8e-30
Identities = 169/228 (74%), Gaps = 0/228 (0%)
Strand=Plus/Minus
Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303
||||| || ||||| || ||||| |||||||| ||||| || |||| || ||| || ||
Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858
Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363
|||| | | | | | || | || |||| ||||| ||||| || || |||||||
Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798
Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423
||||| || || | || ||||| ||||| || |||| |||||||| ||||||||||
Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738
Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471
||||| ||||| | || ||||| |||||||||| || | ||||||
Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 170690
Score = 111 bits (122), Expect = 2e-19
Identities = 111/144 (77%), Gaps = 0/144 (0%)
Strand=Plus/Minus
Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387
|| |||| ||||| ||||| || ||| | ||||||||||| || || | || |||||
Sbjct 171061 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTGCCGGCAAG 171002
Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447
||||| || |||| |||||||| ||||||||||||||| ||||| | || |||||
Sbjct 171001 CAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAC 170942
Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471
|||||||||| || | ||||||
Sbjct 170941 CTGGTGCTGCGCCTGCGCGGCGGC 170918
>seq99
Length=333813
Score = 132 bits (146), Expect = 5e-26
Identities = 180/246 (73%), Gaps = 5/246 (2%)
Strand=Plus/Minus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| ||||||||| |||| |||||| || | ||| ||||| |||||| ||| ||||
Sbjct 93406 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAG 93347
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
|| |||||||| || || || || | ||| | |||| | ||| ||| || |||||
Sbjct 93346 CCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAA 93287
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073
| |||||| ||| || || || |||||||||||| |||| | || ||| ||| |
Sbjct 93286 TATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA--TCGC-TCTGCGCTCGA 93230
Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCGTTTCGATGGCGT 133132
|||||| ||||||||| |||||||| | ||||| ||| || | ||| ||| ||||||
Sbjct 93229 GATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGAC-CACTGGTACCGTCTCGGTGGCGT 93171
Query 133133 TCAACA 133138
||||
Sbjct 93170 GGAACA 93165
>seq90
Length=671320
Score = 105 bits (116), Expect = 7e-18
Identities = 149/209 (71%), Gaps = 3/209 (1%)
Strand=Plus/Minus
Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953
||| ||||||||| |||| |||||| || | ||| ||||| ||||| ||| || |
Sbjct 288504 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAG 288445
Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013
||||||||||||| || || |||||||| | ||||| || ||| || ||||
Sbjct 288444 GCCGGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAG 288385
Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073
|| |||||| ||| || || |||||||| |||| |||| ||| | |||| |
Sbjct 288384 GATGCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGCGAAGCTGGACCC---GCTGCC 288328
Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTT 133102
|||||| | || ||||| || |||||||
Sbjct 288327 GATCCACCTGAGGGCCCACTCCGCCTTTT 288299
Score = 89.7 bits (98), Expect = 5e-13
Identities = 91/119 (76%), Gaps = 0/119 (0%)
Strand=Plus/Minus
Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353
||||| |||||| ||| || || ||||| || | || |||||| |||||||||| |
Sbjct 287468 ACGATACCGTCGGAGGCCGCAAAGAAGGCGAGAATGTAGGAGATGAAGTGGCGCTCGTCG 287409
Query 133354 TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412
||| ||| ||| |||| || ||| |||| ||| |||||||||||||| || |||||
Sbjct 287408 TCGGTCAGTCGCACCCAATCCCGCATGTCGGCGGATAGGTCCACCTCCTCCACAGTCCA 287350
>seq149
Length=203194
Score = 98.7 bits (108), Expect = 1e-15
Identities = 95/122 (78%), Gaps = 0/122 (0%)
Strand=Plus/Minus
Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396
|| || |||||||| ||| | ||||||||||| || || | |||||||| ||||||||
Sbjct 6982 GATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAG 6923
Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456
|| | |||||||| ||||||||||||||| ||||| | || || || |||| |||
Sbjct 6922 GATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTG 6863
Query 38457 CG 38458
||
Sbjct 6862 CG 6861
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 500170461692160
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |