Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Auxenochlorella_20protothecoides_20[refseq_20GCF_5F000733215.1_20201 4-08-01] 374 sequences; 22,924,637 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq133 145 8e-30 seq99 132 5e-26 seq90 105 7e-18 seq149 98.7 1e-15 >seq133 Length=726431 Score = 145 bits (160), Expect = 8e-30 Identities = 169/228 (74%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || ||||| || ||||| |||||||| ||||| || |||| || ||| || || Sbjct 170917 ATGCAGATCTTCGTCAAGACGCTGACGGGCAAGACCATTACGCTCGAAGTGGAGTCCTCC 170858 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 |||| | | | | | || | || |||| ||||| ||||| || || ||||||| Sbjct 170857 GACACCATTGACAATGTGAAGGCCAAGATCCAGGACAAGGAGGGCATCCCTCCCGACCAG 170798 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | || ||||| ||||| || |||| |||||||| |||||||||| Sbjct 170797 CAGCGCCTGATCTTTGCCGGCAAGCAGCTCGAGGACGGCCGCACCCTGTCCGACTACAAC 170738 Query 38424 ATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGC 38471 ||||| ||||| | || ||||| |||||||||| || | |||||| Sbjct 170737 ATCCAGAAGGAGTCCACCCTGCACCTGGTGCTGCGCCTGCGCGGCGGC 170690 Score = 111 bits (122), Expect = 2e-19 Identities = 111/144 (77%), Gaps = 0/144 (0%) Strand=Plus/Minus Query 38328 AAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAA 38387 || |||| ||||| ||||| || ||| | ||||||||||| || || | || ||||| Sbjct 171061 AAGATCCAGGACAAGGAGGGCATCCCCCCGGACCAACAGCGCCTGATCTTTGCCGGCAAG 171002 Query 38388 CAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCAT 38447 ||||| || |||| |||||||| ||||||||||||||| ||||| | || ||||| Sbjct 171001 CAGCTCGAGGACGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTGCAC 170942 Query 38448 TTGGTGCTGCGTTTGAGAGGCGGC 38471 |||||||||| || | |||||| Sbjct 170941 CTGGTGCTGCGCCTGCGCGGCGGC 170918 >seq99 Length=333813 Score = 132 bits (146), Expect = 5e-26 Identities = 180/246 (73%), Gaps = 5/246 (2%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| |||||| || | ||| ||||| |||||| ||| |||| Sbjct 93406 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCGCGGGAGATGAGCTCGTTGGAGAAGGTCAG 93347 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 || |||||||| || || || || | ||| | |||| | ||| ||| || ||||| Sbjct 93346 CCCCGGCATGAGCCCCCGCTTCTTCACCCAGTAGATGGAGCAGAAGGAGCCGGAGAAGAA 93287 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 | |||||| ||| || || || |||||||||||| |||| | || ||| ||| | Sbjct 93286 TATGCCCTCCACGCAGGCAAAGGCGACCAGGCGCTCGGCGAA--TCGC-TCTGCGCTCGA 93230 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTTCTTTGACGCAC-GGCATCGTTTCGATGGCGT 133132 |||||| ||||||||| |||||||| | ||||| ||| || | ||| ||| |||||| Sbjct 93229 GATCCACTTCAGCGCCCAGTCGGCCTTCTTCTTGAC-CACTGGTACCGTCTCGGTGGCGT 93171 Query 133133 TCAACA 133138 |||| Sbjct 93170 GGAACA 93165 >seq90 Length=671320 Score = 105 bits (116), Expect = 7e-18 Identities = 149/209 (71%), Gaps = 3/209 (1%) Strand=Plus/Minus Query 132894 GCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTGAAAGTCAA 132953 ||| ||||||||| |||| |||||| || | ||| ||||| ||||| ||| || | Sbjct 288504 GCAGGCAAAGTCGGTGTGCAGGCCCTCATCACGGGAGATGAGCTCGTTTGAGAAGGTGAG 288445 Query 132954 GCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCCGAAAAGAA 133013 ||||||||||||| || || |||||||| | ||||| || ||| || |||| Sbjct 288444 GCCGGGCATGAGGTGCCGCTTCTTGAGCCAGTAGATGGCACAAAAGGAGCCGGAGAAGAG 288385 Query 133014 GACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCTTTGCTGGC 133073 || |||||| ||| || || |||||||| |||| |||| ||| | |||| | Sbjct 288384 GATGCCCTCCACGCAGGCAAAGGCCACCAGCCGCTGCGCGAAGCTGGACCC---GCTGCC 288328 Query 133074 GATCCAGCGCAGCGCCCATTCGGCCTTTT 133102 |||||| | || ||||| || ||||||| Sbjct 288327 GATCCACCTGAGGGCCCACTCCGCCTTTT 288299 Score = 89.7 bits (98), Expect = 5e-13 Identities = 91/119 (76%), Gaps = 0/119 (0%) Strand=Plus/Minus Query 133294 ACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCGCTCGTTG 133353 ||||| |||||| ||| || || ||||| || | || |||||| |||||||||| | Sbjct 287468 ACGATACCGTCGGAGGCCGCAAAGAAGGCGAGAATGTAGGAGATGAAGTGGCGCTCGTCG 287409 Query 133354 TCGTTCAAGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTCGACGGTCCA 133412 ||| ||| ||| |||| || ||| |||| ||| |||||||||||||| || ||||| Sbjct 287408 TCGGTCAGTCGCACCCAATCCCGCATGTCGGCGGATAGGTCCACCTCCTCCACAGTCCA 287350 >seq149 Length=203194 Score = 98.7 bits (108), Expect = 1e-15 Identities = 95/122 (78%), Gaps = 0/122 (0%) Strand=Plus/Minus Query 38337 GACAAAGAGGGAATTCCCGCCGACCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGAC 38396 || || |||||||| ||| | ||||||||||| || || | |||||||| |||||||| Sbjct 6982 GATAAGGAGGGAATCCCCCCGGACCAACAGCGCCTGATCTTTGCGGGCAAGCAGCTGGAG 6923 Query 38397 GACGAGCGCACCCTCAACGACTACAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTG 38456 || | |||||||| ||||||||||||||| ||||| | || || || |||| ||| Sbjct 6922 GATGGCCGCACCCTGTCCGACTACAACATCCAGAAGGAGTCCACCCTCCACCTGGTCCTG 6863 Query 38457 CG 38458 || Sbjct 6862 CG 6861 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500170461692160